| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00041724m |
| Family | GH10 |
| Protein Properties | Length: 579 Molecular Weight: 64086.9 Isoelectric Point: 8.5402 |
| Chromosome | Chromosome/Scaffold: 0165608 Start: 3 End: 2414 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 231 | 492 | 0 |
| AGFPFGNTMTKEILNLPAYEKWFTSRFTVATFENEMKWYSTEWNQNQEDYRIPDAMLKLANKYGIRVRGHNVFWDDQNSQIRWVRPMNTDQLKAAMQKRL KSVVSRYAGKVIHWDVVNENLHFNFFEGKFGPTASAQIYSQVGQIDHSAILFMNEFNTLEQPGDPNPVPSKYVAKMTQIRSYPGNGGLKLGVGLESHFST PNFPYMRSALDTLAKLKLPMWLTEVDVVKGPNQVKFLEQVLREGYGHPSVNGMIMWAAWHAN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 579 Download |
| VVLSLFLCVA FLQGCMVHSV EYDHTASIEC LGDPMKPLYN GGIIQNGGFN SGLMGWSTHR 60 NIKAGVRSSP SGNKFAVVHG AGGTLSSSGN ILPSHSVYQR VRMQRDTHYS LSAWLQVPAG 120 SAHVKAVVKG PNGERIIAGS VVAQSGCWSM LKGGMTAYSS GHGEIFFESD APVDIWVDSV 180 SLQPFSFDEW DAHARRSANA TRRSTIRLVA KGAHDDKPMA NATVIIELLR AGFPFGNTMT 240 KEILNLPAYE KWFTSRFTVA TFENEMKWYS TEWNQNQEDY RIPDAMLKLA NKYGIRVRGH 300 NVFWDDQNSQ IRWVRPMNTD QLKAAMQKRL KSVVSRYAGK VIHWDVVNEN LHFNFFEGKF 360 GPTASAQIYS QVGQIDHSAI LFMNEFNTLE QPGDPNPVPS KYVAKMTQIR SYPGNGGLKL 420 GVGLESHFST PNFPYMRSAL DTLAKLKLPM WLTEVDVVKG PNQVKFLEQV LREGYGHPSV 480 NGMIMWAAWH ANGCYVMCLT DNNFKNLPVG NVVDKLIAEW KTHNKAATTD ENGIVELNLP 540 HGEFNFTVTH PSVKGATIHT MTVDAASSAS EHTITVRV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 2.0e-25 | 230 | 461 | 246 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-36 | 227 | 486 | 280 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-68 | 266 | 513 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM08566.1 | 0 | 35 | 578 | 1 | 541 | AC092749_19 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
| GenBank | EEC66792.1 | 0 | 1 | 578 | 5 | 578 | hypothetical protein OsI_33191 [Oryza sativa Indica Group] |
| GenBank | EEE50812.1 | 0 | 35 | 578 | 1 | 533 | hypothetical protein OsJ_31205 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064415.1 | 0 | 1 | 578 | 5 | 578 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002461545.1 | 0 | 27 | 577 | 8 | 566 | hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-21 | 235 | 513 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xyz_B | 3e-18 | 247 | 487 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 3e-18 | 247 | 487 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1e0v_A | 6e-18 | 220 | 461 | 1 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 6e-18 | 220 | 461 | 1 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
