Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00042163m |
Family | GH5 |
Protein Properties | Length: 419 Molecular Weight: 46384.9 Isoelectric Point: 6.2276 |
Chromosome | Chromosome/Scaffold: 017203 Start: 7010 End: 8948 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 57 | 391 | 4.7e-37 |
ASGRPFIVHGFNTYWLMYFAADPATRPAVTAAFADAAGAGLNVCRTWAFNDGGYRALQLKPFSCDEEVFQALDFVISEARKYKIRLILSLCNNWKDYGGK PQYVRWGKEAGLDLPSDDDFFSDPTIKSYYKAFVKAVSTRINTITNVAYKDDPTILAWELINEPRCHSDPSGDTLQAWIEEMASYVKSIDPVHLLEIGVK GFYGPSTPEHLHVNPDAYSGTVGTDFIRNHRALGIDLASVHIYSDNWLPHTVEENHLQFVKTWMQQHIDDAANLLGMPILIGEFGVSLKDGKFGHKFCEA FMETVYSIFLSSWKSGVIGGGCLVWQLFPQSAEHM |
Full Sequence |
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Protein Sequence Length: 419 Download |
MEAPGSGMCS PLAAPALQVT PRVSLLHCLL LASMSLTPPP GADEWAVVER RGPHLRASGR 60 PFIVHGFNTY WLMYFAADPA TRPAVTAAFA DAAGAGLNVC RTWAFNDGGY RALQLKPFSC 120 DEEVFQALDF VISEARKYKI RLILSLCNNW KDYGGKPQYV RWGKEAGLDL PSDDDFFSDP 180 TIKSYYKAFV KAVSTRINTI TNVAYKDDPT ILAWELINEP RCHSDPSGDT LQAWIEEMAS 240 YVKSIDPVHL LEIGVKGFYG PSTPEHLHVN PDAYSGTVGT DFIRNHRALG IDLASVHIYS 300 DNWLPHTVEE NHLQFVKTWM QQHIDDAANL LGMPILIGEF GVSLKDGKFG HKFCEAFMET 360 VYSIFLSSWK SGVIGGGCLV WQLFPQSAEH MDDGYAVIFG KSPSTLKLLA KHSRSLEY* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.001 | 204 | 255 | 61 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
COG2730 | BglC | 0.0008 | 101 | 341 | 266 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
pfam00150 | Cellulase | 3.0e-7 | 57 | 347 | 300 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 3.0e-20 | 125 | 343 | 220 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ19452.1 | 0 | 47 | 417 | 1 | 368 | hypothetical protein OsJ_35013 [Oryza sativa Japonica Group] |
GenBank | EEC67554.1 | 0 | 45 | 417 | 9 | 378 | hypothetical protein OsI_34887 [Oryza sativa Indica Group] |
GenBank | EEE52650.1 | 0 | 45 | 417 | 9 | 381 | hypothetical protein OsJ_35012 [Oryza sativa Japonica Group] |
Swiss-Prot | Q2RBB1 | 0 | 45 | 417 | 9 | 378 | MAN7_ORYSJ RecName: Full=Mannan endo-1,4-beta-mannosidase 7; AltName: Full=Beta-mannanase 7; AltName: Full=Endo-beta-1,4-mannanase 7; AltName: Full=OsMAN7 |
RefSeq | XP_002450155.1 | 0 | 38 | 417 | 2 | 383 | hypothetical protein SORBIDRAFT_05g001260 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 52 | 416 | 11 | 369 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 51 | 342 | 17 | 310 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 51 | 342 | 17 | 310 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 51 | 342 | 17 | 310 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 51 | 342 | 17 | 310 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT747977 | 293 | 47 | 339 | 0 |
JK987915 | 293 | 43 | 335 | 0 |
EX342637 | 278 | 67 | 343 | 0 |
CA270579 | 189 | 229 | 417 | 0 |
HX195966 | 247 | 39 | 283 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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