Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00042409m |
Family | GH28 |
Protein Properties | Length: 182 Molecular Weight: 19038.8 Isoelectric Point: 8.076 |
Chromosome | Chromosome/Scaffold: 0167568 Start: 8 End: 910 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 1 | 170 | 0 |
IGVGDDCISIGPGSTKVNITGVTCGPGHGISIGSLGRYKDEKDVTDITVKDCTLKKSTNGLRIKAYEDAKSMLTASKIHYENIKMEDAANPIIIDMKYCP NKICTASGDSKVTVKDVSFKNATGTSTPEAVSLLCSDKIPCSGVTMDNVKVEYSGKNNKTMAVCNNAKGS |
Full Sequence |
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Protein Sequence Length: 182 Download |
IGVGDDCISI GPGSTKVNIT GVTCGPGHGI SIGSLGRYKD EKDVTDITVK DCTLKKSTNG 60 LRIKAYEDAK SMLTASKIHY ENIKMEDAAN PIIIDMKYCP NKICTASGDS KVTVKDVSFK 120 NATGTSTPEA VSLLCSDKIP CSGVTMDNVK VEYSGKNNKT MAVCNNAKGS STGCLKELAC 180 L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 7.0e-37 | 1 | 181 | 182 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-37 | 1 | 167 | 168 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-43 | 1 | 181 | 183 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-58 | 1 | 173 | 174 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-59 | 1 | 168 | 169 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF19730.2 | 0 | 1 | 181 | 71 | 252 | Os06g0545800 [Oryza sativa Japonica Group] |
EMBL | CAA40803.1 | 0 | 3 | 181 | 1 | 180 | polygalacturonase [Zea mays] |
RefSeq | XP_002437275.1 | 0 | 1 | 181 | 229 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
RefSeq | XP_002438528.1 | 0 | 1 | 181 | 241 | 422 | hypothetical protein SORBIDRAFT_10g021590 [Sorghum bicolor] |
RefSeq | XP_002438669.1 | 0 | 1 | 181 | 14 | 195 | hypothetical protein SORBIDRAFT_10g024000 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.00000000000004 | 5 | 151 | 175 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000004 | 5 | 151 | 175 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000004 | 5 | 151 | 175 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000004 | 5 | 151 | 175 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.00000000000004 | 5 | 151 | 175 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG879063 | 183 | 1 | 182 | 0 |
FL752313 | 183 | 1 | 182 | 0 |
FL806437 | 183 | 1 | 182 | 0 |
FL820096 | 183 | 1 | 182 | 0 |
CF480173 | 180 | 4 | 182 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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