| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00042420m |
| Family | GH51 |
| Protein Properties | Length: 628 Molecular Weight: 69159.8 Isoelectric Point: 4.7408 |
| Chromosome | Chromosome/Scaffold: 016959 Start: 2720 End: 8824 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH51 | 227 | 627 | 0 |
| IWFDQVSLMPSDTFMGHGFRKDLAYMLANLKPRFLKFPGGNYVMGNYLVNAFRWSETVGPWEERPGHFNDAWAYWTDDGLGFFEFLQLAEDLGACPFWVV NDGASLNEEVPTATIAAFVKDVVNGIEFARGDPQTAWGSVRAAMGHPEPFQLYYVSIGNQECSKYYYKDNYMKFYSAIKASYPDITIISSCDRSAVSPVN PADLYDVHVYTSSGDMFSRSRMFDNTARSGPKAIVSEYAVTGNDAGRGTLIAALAEAAFLIGLERNSDVVEMASCAPLFVNDNDRRWNPDAIVFNSWQHY GCPNYWMLHFFKDSSGAALHPSTIQLSNYDQLVTSAITWNNSQDGNTYLKIKVVNFGSKAVNLNISVTGLETDIQKFGSIKTVLTSGWLRDENSFQQPDK V | |||
| Full Sequence |
|---|
| Protein Sequence Length: 628 Download |
| MGVLRAGSVC WLFHVLVLVC ALCQILYVGS VGAQTAQLSV DASPQNAQVI PGNMFGIFFE 60 EINHAGAGGL WAELVSNRGF EAGGPNTPSN IDPWLIIGDE SNIIVATDRS SCFAGNPIAL 120 RMEVHCETTG TNACPSGGVG IYNPGYWGMN IERRKVYRAT MYIKSSESVE LTVSLTSSDG 180 LQILASHTIT GDKEDFVEWT KVEFDLESIG RNTNSRLQLT TTKSGIIWFD QVSLMPSDTF 240 MGHGFRKDLA YMLANLKPRF LKFPGGNYVM GNYLVNAFRW SETVGPWEER PGHFNDAWAY 300 WTDDGLGFFE FLQLAEDLGA CPFWVVNDGA SLNEEVPTAT IAAFVKDVVN GIEFARGDPQ 360 TAWGSVRAAM GHPEPFQLYY VSIGNQECSK YYYKDNYMKF YSAIKASYPD ITIISSCDRS 420 AVSPVNPADL YDVHVYTSSG DMFSRSRMFD NTARSGPKAI VSEYAVTGND AGRGTLIAAL 480 AEAAFLIGLE RNSDVVEMAS CAPLFVNDND RRWNPDAIVF NSWQHYGCPN YWMLHFFKDS 540 SGAALHPSTI QLSNYDQLVT SAITWNNSQD GNTYLKIKVV NFGSKAVNLN ISVTGLETDI 600 QKFGSIKTVL TSGWLRDENS FQQPDKV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam06964 | Alpha-L-AF_C | 2.0e-22 | 462 | 627 | 182 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| COG3534 | AbfA | 5.0e-26 | 244 | 386 | 143 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| smart00813 | Alpha-L-AF_C | 1.0e-33 | 462 | 627 | 175 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95656.1 | 0 | 1 | 627 | 1 | 627 | Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAC10349.1 | 0 | 1 | 627 | 1 | 626 | putative arabinoxylan narabinofuranohydrolase isoenzyme AXAH-I [Oryza sativa Japonica Group] |
| GenBank | EEC75141.1 | 0 | 1 | 627 | 1 | 631 | hypothetical protein OsI_11337 [Oryza sativa Indica Group] |
| GenBank | EEE58961.1 | 0 | 1 | 627 | 1 | 631 | hypothetical protein OsJ_10647 [Oryza sativa Japonica Group] |
| RefSeq | XP_002463418.1 | 0 | 1 | 627 | 1 | 628 | hypothetical protein SORBIDRAFT_02g043530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ug5_F | 5e-17 | 244 | 627 | 68 | 474 | A Chain A, Crystal Structure Of A Putative Metallopeptidase (Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A Resolution |
| PDB | 3ug5_E | 5e-17 | 244 | 627 | 68 | 474 | A Chain A, Crystal Structure Of A Putative Metallopeptidase (Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A Resolution |
| PDB | 3ug5_D | 5e-17 | 244 | 627 | 68 | 474 | A Chain A, Crystal Structure Of A Putative Metallopeptidase (Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A Resolution |
| PDB | 3ug5_C | 5e-17 | 244 | 627 | 68 | 474 | A Chain A, Crystal Structure Of A Putative Metallopeptidase (Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A Resolution |
| PDB | 3ug5_B | 5e-17 | 244 | 627 | 68 | 474 | A Chain A, Crystal Structure Of A Putative Metallopeptidase (Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A Resolution |
