Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00042459m |
Family | GH5 |
Protein Properties | Length: 394 Molecular Weight: 43307.6 Isoelectric Point: 4.7336 |
Chromosome | Chromosome/Scaffold: 0166545 Start: 297 End: 2588 |
Description | |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 216 | 374 | 5.1e-32 |
EEHRRNFVSGSDFSFISQNGINAVRIPVGWWIAYDPDPPAPFIGGSLNALDRAFHWAQIYGLKCIIDLHAAPGSQNGMEHSASRDGSVDWPSEANIQKTL DVINFLAQRYADNPCLLGIELLNEPSAAAVPIDTLVSYYKTGYQIVRSYSDTAYVIFCQ |
Full Sequence |
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Protein Sequence Length: 394 Download |
MAMRLPRAGL LVFVVLLSAF RLADSSTDNN SSKVRAVNLG GWLVVEGWIK PSLFDGIPNR 60 DMLDGTQVQL KSVGLQKYVC AGNGGGGNVT VDRDAASSWE TFKLWRISMN EFQFRCFNGQ 120 FWTASDGDVI SATADSPGDS ETFYIERNNT LLHIKLLNGS YLRVTDNNQL TSNYPSQPGW 180 DDATATFEMT IVANNLHGDY QLANGYGPVK AKSVLEEHRR NFVSGSDFSF ISQNGINAVR 240 IPVGWWIAYD PDPPAPFIGG SLNALDRAFH WAQIYGLKCI IDLHAAPGSQ NGMEHSASRD 300 GSVDWPSEAN IQKTLDVINF LAQRYADNPC LLGIELLNEP SAAAVPIDTL VSYYKTGYQI 360 VRSYSDTAYV IFCQRIGNAD PMELYQADLG ATNT |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00257 | Fascin | 0.001 | 65 | 145 | 81 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
cd00257 | Fascin | 2.0e-9 | 66 | 189 | 125 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
pfam00150 | Cellulase | 2.0e-10 | 226 | 371 | 148 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 2.0e-24 | 195 | 340 | 148 | + Endoglucanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0030674 | protein binding, bridging |
GO:0051015 | actin filament binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ07396.1 | 0 | 3 | 394 | 1 | 405 | hypothetical protein OsI_29647 [Oryza sativa Indica Group] |
RefSeq | NP_001062079.1 | 0 | 3 | 394 | 1 | 405 | Os08g0484100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002262875.1 | 0 | 12 | 393 | 56 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002438060.1 | 0 | 9 | 394 | 5 | 404 | hypothetical protein SORBIDRAFT_10g007500 [Sorghum bicolor] |
RefSeq | XP_002533566.1 | 0 | 32 | 393 | 15 | 379 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1eqp_A | 3e-26 | 199 | 371 | 45 | 218 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
PDB | 2pc8_A | 4e-26 | 199 | 371 | 51 | 224 | A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans In Complex With Two Separately Bound Glucopyranoside Units At 1.8 A |
PDB | 2pbo_A | 4e-26 | 199 | 371 | 51 | 224 | A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A |