| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00042645m |
| Family | GH28 |
| Protein Properties | Length: 319 Molecular Weight: 34834.9 Isoelectric Point: 9.2013 |
| Chromosome | Chromosome/Scaffold: 0168276 Start: 169 End: 1529 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 66 | 306 | 0 |
| DIACSSSQSAIVIIPKAKRYLTKHVTFSGPCKSNIMLMIEGTLMAPPRGSLWSKKTNRHWILFNGVNGRTVTSCGTIDGNGKLWWQKSCKFSSRVQIHMS VEDCSHAKLAHLSITAPGTSPNTDGIHIARSRRVHITDCTIKTGDDCISIEDGTENLHVKNILCGPGHGISIGSLGDHGSEAYVIKVTVDSVTLHGTTNG ARIKTWQGGRGYAKNIIFRNMIMDSVWNPIIIDQNYCDSAT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 319 Download |
| MASNVFVFCA TVLLSFFLCG VGADGDINGT TRRDRSLESK VFDVRKYGAH GDGHHDDTKA 60 LVKAWDIACS SSQSAIVIIP KAKRYLTKHV TFSGPCKSNI MLMIEGTLMA PPRGSLWSKK 120 TNRHWILFNG VNGRTVTSCG TIDGNGKLWW QKSCKFSSRV QIHMSVEDCS HAKLAHLSIT 180 APGTSPNTDG IHIARSRRVH ITDCTIKTGD DCISIEDGTE NLHVKNILCG PGHGISIGSL 240 GDHGSEAYVI KVTVDSVTLH GTTNGARIKT WQGGRGYAKN IIFRNMIMDS VWNPIIIDQN 300 YCDSATPCKK HARYIFLK* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 3.0e-73 | 39 | 301 | 283 | + Probable polygalacturonase At3g15720 |
| PLN03010 | PLN03010 | 5.0e-77 | 40 | 303 | 278 | + polygalacturonase |
| PLN02188 | PLN02188 | 3.0e-79 | 13 | 302 | 321 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02218 | PLN02218 | 7.0e-92 | 26 | 303 | 310 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 7.0e-96 | 31 | 308 | 306 | + Probable polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57273.1 | 0 | 1 | 315 | 1 | 354 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| DDBJ | BAC57279.1 | 0 | 1 | 315 | 1 | 354 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAZ03178.1 | 0 | 1 | 318 | 1 | 357 | hypothetical protein OsI_25331 [Oryza sativa Indica Group] |
| GenBank | EAZ39077.1 | 0 | 1 | 315 | 1 | 354 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
| GenBank | EEC81719.1 | 0 | 1 | 315 | 1 | 354 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000003 | 178 | 301 | 191 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000003 | 187 | 301 | 152 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000003 | 187 | 301 | 152 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000003 | 187 | 301 | 152 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000003 | 187 | 301 | 152 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
