| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00042892m |
| Family | GH116 |
| Protein Properties | Length: 960 Molecular Weight: 107747 Isoelectric Point: 7.4444 |
| Chromosome | Chromosome/Scaffold: 016817 Start: 885 End: 8860 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH116 | 542 | 904 | 0 |
| GKFLYLEGVEYIMWNTYDVHFYASFALLDLFPKIELSIQRDFANAVLYEDQRKVKFLADGASGIRKVKGAVPHDLGTHDPWHEMNAYNIHDTSKWKDLNP KFVLQIYRDFAATGDMQFGRDVWPAVCAAMDYMDQFDRDRDGLIENDGFPDQTYDAWTVHGISAYCGCLWLAALQAAATMAHRLGDRHFAEKYKLKFIKA KAVYEAKLWNGSYFNYDSGTSSNSRSIQADQLAGQWYTASSGLPPLFDENKIRSALQKIFEFNVMKVKGGRMGAVNGMTPKGKVDETCMQSREIWTGVTY AVAANMLLHGMEHQGFTTAEGIFIAGWSEEGYGYWFQTPEGWTTDGHYRSLVYMRPLAIWAIQ | |||
| Full Sequence |
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| Protein Sequence Length: 960 Download |
| MVGGHIFHYR RNSWPAEEYV GRTALQLLDF DGGAPPEQAW RRKLNSHANR LKEFSITFME 60 AMRMMSLGLR LWSYVREEAS HGRKAPIDPF TKERCRPSAS QGVPLGGMGS GSISRGFRGE 120 FKNWHIIPGL CESAPVMENQ FSIFVSRDGG NKKYSSVLAP GHHEGLKKKS DSGISSWDWN 180 LSGQHSTYHA LFPRAWTVYD GEPDPDLKIS CRQISPFIPH DYKDSSLPTS VFVYTLVNTG 240 KDRAKVSLLM TWANSIGGFS HNSGGHYNEP FITAKDNPPV TFAVAACETQ NVNVTVLPVF 300 GLTGENHVSA KEMWNTMVQN GNFNRENFSA GPSMPSSPGQ KLCAAVSAST WVEPHGRCTV 360 AFALAWSSPK VKFQKGCTYN RRYTQFYGTS ERSAVNLVHD ALTKYKLWEE EIEKWQNPIL 420 KDERLPEWYK FTLFNELYFL VAGGTVWTDG QPPAINEKAS PGSKSSKRGT KDTKMESVKD 480 SHVNMTAEQV PDSGHMTNGD ERSVSKFAAV HGSQMQEQTN GGHNLEEPIP YLISKDGPEN 540 VGKFLYLEGV EYIMWNTYDV HFYASFALLD LFPKIELSIQ RDFANAVLYE DQRKVKFLAD 600 GASGIRKVKG AVPHDLGTHD PWHEMNAYNI HDTSKWKDLN PKFVLQIYRD FAATGDMQFG 660 RDVWPAVCAA MDYMDQFDRD RDGLIENDGF PDQTYDAWTV HGISAYCGCL WLAALQAAAT 720 MAHRLGDRHF AEKYKLKFIK AKAVYEAKLW NGSYFNYDSG TSSNSRSIQA DQLAGQWYTA 780 SSGLPPLFDE NKIRSALQKI FEFNVMKVKG GRMGAVNGMT PKGKVDETCM QSREIWTGVT 840 YAVAANMLLH GMEHQGFTTA EGIFIAGWSE EGYGYWFQTP EGWTTDGHYR SLVYMRPLAI 900 WAIQYALSPP KAILEAPKVN LMDRIHISPH MARAISEISI RKIAPDNRCF PSSAFQCEC* 960 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3408 | GDB1 | 0.0002 | 610 | 699 | 99 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
| COG4354 | COG4354 | 8.0e-28 | 102 | 449 | 374 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 2.0e-54 | 102 | 408 | 331 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 1.0e-69 | 541 | 907 | 385 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 3.0e-161 | 542 | 905 | 368 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL31035.1 | 0 | 1 | 959 | 1 | 967 | AC078948_19 unknown protein [Oryza sativa Japonica Group] |
| GenBank | EEC67156.1 | 0 | 1 | 959 | 1 | 974 | hypothetical protein OsI_34005 [Oryza sativa Indica Group] |
| GenBank | EEE51125.1 | 0 | 1 | 959 | 1 | 935 | hypothetical protein OsJ_31868 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064833.1 | 0 | 1 | 959 | 1 | 974 | Os10g0473400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002518119.1 | 0 | 1 | 959 | 1 | 968 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT045992 | 339 | 608 | 946 | 0 |
| GO856558 | 338 | 616 | 953 | 0 |
| GO868913 | 331 | 525 | 855 | 0 |
| HO779860 | 279 | 684 | 960 | 0 |
| HO779860 | 154 | 532 | 685 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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