Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00043118m |
Family | CBM43 |
Protein Properties | Length: 435 Molecular Weight: 46652.4 Isoelectric Point: 7.321 |
Chromosome | Chromosome/Scaffold: 0306418 Start: 103 End: 1407 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 359 | 433 | 2.6e-30 |
WCVANASAGQARLQAALDYACGHGADCSDIQPRAPCFEPNTVVAHASHAFNSYYQRSGRDKAACDFAGAAYVVHH | |||
GH17 | 4 | 351 | 0 |
VGVSYGRLGNNLPSTASVVKLLKQSGITTVRLYDANSTVLKALANTGITVMVMLPNDHLAAAAADPSSARRWVRQNVAAHYPATRIHGVAVGNEVFEEAS NLTRQLVPAMANVHAALVRLGLDEAVKVSTPIAFTALQESWPPSAGRFRDDIAKPVMKPMLDFLERTRSYLTINAYPFFAYVEQPDKISLDYALGNSKAG VRDPVTGLVYHSLLDAQLDATYFAMEKLGSSASARQGNSLGGPDASAYISESGWSSGGRRRPGRRLEKAGYGAGAPAATIANAKAYNNYLINRVLSGDTG TPYRPDADMDVYIFALFNENEKGCGADDIEQHFGLFYPNQTKVYEFDF |
Full Sequence |
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Protein Sequence Length: 435 Download |
AGEVGVSYGR LGNNLPSTAS VVKLLKQSGI TTVRLYDANS TVLKALANTG ITVMVMLPND 60 HLAAAAADPS SARRWVRQNV AAHYPATRIH GVAVGNEVFE EASNLTRQLV PAMANVHAAL 120 VRLGLDEAVK VSTPIAFTAL QESWPPSAGR FRDDIAKPVM KPMLDFLERT RSYLTINAYP 180 FFAYVEQPDK ISLDYALGNS KAGVRDPVTG LVYHSLLDAQ LDATYFAMEK LGSSASARQG 240 NSLGGPDASA YISESGWSSG GRRRPGRRLE KAGYGAGAPA ATIANAKAYN NYLINRVLSG 300 DTGTPYRPDA DMDVYIFALF NENEKGCGAD DIEQHFGLFY PNQTKVYEFD FRGGALPSWC 360 VANASAGQAR LQAALDYACG HGADCSDIQP RAPCFEPNTV VAHASHAFNS YYQRSGRDKA 420 ACDFAGAAYV VHHAP |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-25 | 358 | 429 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-37 | 358 | 431 | 74 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-83 | 4 | 351 | 353 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001151472.1 | 0 | 1 | 435 | 25 | 468 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | NP_001151472.1 | 8e-29 | 358 | 435 | 477 | 554 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002462967.1 | 0 | 1 | 435 | 25 | 472 | hypothetical protein SORBIDRAFT_02g035480 [Sorghum bicolor] |
RefSeq | XP_002462968.1 | 0 | 1 | 435 | 26 | 469 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
RefSeq | XP_002462968.1 | 7e-28 | 358 | 435 | 478 | 555 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 4 | 351 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 3 | 351 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 3 | 351 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 3 | 351 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 3 | 351 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE288311 | 287 | 68 | 346 | 0 |
DR785215 | 279 | 155 | 424 | 0 |
EC895176 | 273 | 68 | 328 | 0 |
DY234276 | 267 | 68 | 326 | 0 |
DR785214 | 264 | 68 | 319 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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