Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00043148m |
Family | GH28 |
Protein Properties | Length: 358 Molecular Weight: 37964.7 Isoelectric Point: 7.3349 |
Chromosome | Chromosome/Scaffold: 0307183 Start: 98 End: 1488 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 326 | 0 |
VAPSDPDKWPANNKRNWLVFYNAHGTTLRGAGLIDGKGQKWWDLPCKAHKVVYLYSIRKEYIVAQVSEEIPLQGQGGSSGHGASCDSPVALRFFTSNNVT VQGLRVQNSPEFHFRFDSCRGVVVSGLSISSPQQSPNTDGIHIENTQDVLVANTAVSNGDDCVSIGAGALNVRIENVTCALGHGISIGSLGKQGTRACVA NVTVRNAVIRRSDNGVRIKTWQGGSGSVSSVAFENVRMDAVRNPIIIDQYYCLSRTCENATTAVFVSGVSYAGIRGTYDARSPPIHFGCSDAVPCTNITL ADVELLPAASSSGQAADEPFCWNVY |
Full Sequence |
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Protein Sequence Length: 358 Download |
MVAPSDPDKW PANNKRNWLV FYNAHGTTLR GAGLIDGKGQ KWWDLPCKAH KVVYLYSIRK 60 EYIVAQVSEE IPLQGQGGSS GHGASCDSPV ALRFFTSNNV TVQGLRVQNS PEFHFRFDSC 120 RGVVVSGLSI SSPQQSPNTD GIHIENTQDV LVANTAVSNG DDCVSIGAGA LNVRIENVTC 180 ALGHGISIGS LGKQGTRACV ANVTVRNAVI RRSDNGVRIK TWQGGSGSVS SVAFENVRMD 240 AVRNPIIIDQ YYCLSRTCEN ATTAVFVSGV SYAGIRGTYD ARSPPIHFGC SDAVPCTNIT 300 LADVELLPAA SSSGQAADEP FCWNVYGNAA APTVPPVACL MDGVPGNYAD KSSLKCY* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-60 | 1 | 336 | 340 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-64 | 1 | 340 | 343 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 6.0e-69 | 14 | 306 | 295 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-77 | 3 | 313 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-92 | 1 | 342 | 344 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD86981.1 | 0 | 1 | 357 | 85 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAY73623.1 | 0 | 1 | 357 | 178 | 503 | hypothetical protein OsI_01510 [Oryza sativa Indica Group] |
RefSeq | NP_001042805.1 | 0 | 1 | 357 | 178 | 503 | Os01g0296200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150436.1 | 0 | 1 | 357 | 168 | 499 | polygalacturonase [Zea mays] |
RefSeq | XP_002455500.1 | 0 | 1 | 357 | 175 | 506 | hypothetical protein SORBIDRAFT_03g012280 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 5e-22 | 26 | 313 | 58 | 351 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 5e-22 | 26 | 313 | 58 | 351 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 2e-21 | 28 | 325 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 28 | 325 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 28 | 325 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL951966 | 249 | 84 | 332 | 0 |
FL911445 | 240 | 124 | 358 | 0 |
FL769503 | 260 | 1 | 259 | 0 |
FL951967 | 179 | 180 | 358 | 0 |
FL951967 | 28 | 156 | 183 | 0.001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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