Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00043214m |
Family | GH10 |
Protein Properties | Length: 373 Molecular Weight: 41396.4 Isoelectric Point: 4.916 |
Chromosome | Chromosome/Scaffold: 0303068 Start: 97 End: 1313 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 25 | 314 | 0 |
VMQMDSSFPFGACINPAVIQNPAFVDFFTKHFDWAVFENELKWYHTEAQQGQLNYADSDALLDFCDRYGKPVRGHCIFWAVENTVQQWVKSLDKDQLTAA VQARLQSLLTRYAGRFPHYDVNNEMLHGSFYRDRLGDDVDAFMFREAARLDPGAALFVNDYNVEGGNDPNATPEKYIEQIAALQQKGAPVGGIGLQGHVT NPVGEVICDALDKLSAATDLPVWLTELDVCESDVDLRADDLEVVLREAYAHPAVEGVVFWGFMQGHMWRQDACLVNSDGTVNDAGERFVD |
Full Sequence |
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Protein Sequence Length: 373 Download |
VRKRDVVLNF GSAAASGISG ASVRVMQMDS SFPFGACINP AVIQNPAFVD FFTKHFDWAV 60 FENELKWYHT EAQQGQLNYA DSDALLDFCD RYGKPVRGHC IFWAVENTVQ QWVKSLDKDQ 120 LTAAVQARLQ SLLTRYAGRF PHYDVNNEML HGSFYRDRLG DDVDAFMFRE AARLDPGAAL 180 FVNDYNVEGG NDPNATPEKY IEQIAALQQK GAPVGGIGLQ GHVTNPVGEV ICDALDKLSA 240 ATDLPVWLTE LDVCESDVDL RADDLEVVLR EAYAHPAVEG VVFWGFMQGH MWRQDACLVN 300 SDGTVNDAGE RFVDLRREWT SHARGHIDSA GHFKFRGYHG TYVVQLATAT GKVHKTFSVE 360 KGDTPLVLDM NI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 2.0e-34 | 54 | 294 | 261 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 8.0e-77 | 30 | 314 | 305 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-79 | 65 | 312 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28310.1 | 0 | 1 | 372 | 196 | 565 | unknown [Zea mays] |
GenBank | ACN35740.1 | 0 | 1 | 372 | 24 | 393 | unknown [Zea mays] |
DDBJ | BAD52808.1 | 0 | 1 | 372 | 24 | 392 | putative (1,4)-beta-xylan endohydrolase [Oryza sativa Japonica Group] |
DDBJ | BAF03861.2 | 0 | 1 | 372 | 3 | 371 | Os01g0134900 [Oryza sativa Japonica Group] |
RefSeq | XP_002455241.1 | 0 | 1 | 372 | 194 | 564 | hypothetical protein SORBIDRAFT_03g006950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1tux_A | 1e-32 | 62 | 306 | 46 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 1e-32 | 39 | 306 | 32 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 1e-32 | 39 | 306 | 32 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1xyz_B | 3e-32 | 18 | 292 | 23 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 3e-32 | 18 | 292 | 23 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT807565 | 234 | 140 | 373 | 0 |
FL860597 | 241 | 85 | 323 | 0 |
FL826196 | 193 | 23 | 215 | 0 |
FL826196 | 58 | 210 | 267 | 0 |
FL874412 | 255 | 23 | 277 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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