Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00043360m |
Family | GT47 |
Protein Properties | Length: 243 Molecular Weight: 27081.5 Isoelectric Point: 10.1486 |
Chromosome | Chromosome/Scaffold: 0306157 Start: 111 End: 839 |
Description | glycosyltransferase 18 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 2 | 182 | 2.4e-31 |
PGVANITRLVIERDPWDDMDVGVPYPTGFHPRAAADVRAWQRHVARRPRPMLFAFAGAPRSAIRGDFRALLLGECQAAGPAACGALDCAEGRCIRNNALV MELFMGARFCLQPRGDSFTRRSLFDCIVAGAVPVLFWRRSAYRQYGWYLPVGDGREAEWSVFIDREKLRAGNLTVRAVLAA |
Full Sequence |
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Protein Sequence Length: 243 Download |
MPGVANITRL VIERDPWDDM DVGVPYPTGF HPRAAADVRA WQRHVARRPR PMLFAFAGAP 60 RSAIRGDFRA LLLGECQAAG PAACGALDCA EGRCIRNNAL VMELFMGARF CLQPRGDSFT 120 RRSLFDCIVA GAVPVLFWRR SAYRQYGWYL PVGDGREAEW SVFIDREKLR AGNLTVRAVL 180 AAIPEPRVRL MRERVVEMIP RLVYAAADRG KGLGGGMEDA VDVMVDGMLR RVAEQRPRWR 240 PT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 5.0e-26 | 13 | 183 | 176 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN35419.1 | 0 | 1 | 242 | 239 | 476 | unknown [Zea mays] |
EMBL | CAD41668.3 | 0 | 1 | 240 | 232 | 469 | OSJNBa0019K04.15 [Oryza sativa (japonica cultivar-group)] |
GenBank | EAY95237.1 | 0 | 1 | 240 | 232 | 469 | hypothetical protein OsI_17054 [Oryza sativa Indica Group] |
RefSeq | NP_001053616.1 | 0 | 1 | 240 | 235 | 472 | Os04g0574100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002446968.1 | 0 | 1 | 242 | 240 | 479 | hypothetical protein SORBIDRAFT_06g026020 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CI136633 | 200 | 44 | 243 | 0 |
EE034587 | 179 | 65 | 243 | 0 |
CA484026 | 150 | 1 | 150 | 0 |
EH260217 | 234 | 2 | 235 | 0 |
CV538804 | 234 | 2 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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