Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00043521m |
Family | GH13 |
Protein Properties | Length: 362 Molecular Weight: 39561.2 Isoelectric Point: 4.6352 |
Chromosome | Chromosome/Scaffold: 0305749 Start: 11 End: 1456 |
Description | alpha-amylase-like |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 11 | 272 | 2.4e-30 |
SKYGTAAELKSLIAAFHGKGVQAVADIVINHRCADYKDSRGIYCIYEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLDDRVQRELT EWLLWLKSDIGFDAWRLDFARGYSAEVAKVYVDGTAPSFAVAEIWNGMVPGDDGKPAYDQDPHRQALVDWVNKVGGAASPATVFDFTTKGILNAAVEGEL WRLIDAQGKAPGVIGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGNPCIFY |
Full Sequence |
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Protein Sequence Length: 362 Download |
MPGRLYDLDA SKYGTAAELK SLIAAFHGKG VQAVADIVIN HRCADYKDSR GIYCIYEGGT 60 PDSRLDWGPH MICRDDTQYS DGTGNLDTGA DFAAAPDIDH LDDRVQRELT EWLLWLKSDI 120 GFDAWRLDFA RGYSAEVAKV YVDGTAPSFA VAEIWNGMVP GDDGKPAYDQ DPHRQALVDW 180 VNKVGGAASP ATVFDFTTKG ILNAAVEGEL WRLIDAQGKA PGVIGWWPAK AVTFVDNHDT 240 GSTQAMWPFP SDKVMQGYAY ILTHPGNPCI FYDHFFDWGF KDEIAALVAV RKRNGITPTS 300 QLTILEHDGD AYVAEIDGKV IVKIGARYDV GHLVPAGFEV AAHGNDYAVW EKGAGQESNR 360 L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00810 | Alpha-amyl_C2 | 4.0e-30 | 292 | 352 | 61 | + Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet. | ||
PLN02784 | PLN02784 | 1.0e-118 | 1 | 352 | 353 | + alpha-amylase | ||
PLN02361 | PLN02361 | 3.0e-122 | 1 | 352 | 357 | + alpha-amylase | ||
cd11314 | AmyAc_arch_bac_plant_AmyA | 1.0e-133 | 1 | 302 | 303 | + Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN00196 | PLN00196 | 0 | 1 | 352 | 352 | + alpha-amylase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004556 | alpha-amylase activity |
GO:0005509 | calcium ion binding |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADC54353.1 | 0 | 1 | 354 | 53 | 406 | alpha amylase [Hordeum vulgare subsp. spontaneum] |
GenBank | ADC54357.1 | 0 | 1 | 354 | 53 | 406 | alpha amylase [Hordeum vulgare subsp. spontaneum] |
GenBank | ADC54359.1 | 0 | 1 | 354 | 53 | 406 | alpha amylase [Hordeum vulgare subsp. spontaneum] |
GenBank | ADC54365.1 | 0 | 1 | 354 | 53 | 406 | alpha amylase [Hordeum vulgare subsp. spontaneum] |
RefSeq | XP_002462321.1 | 0 | 1 | 360 | 84 | 434 | hypothetical protein SORBIDRAFT_02g023790 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rpk_A | 0 | 1 | 352 | 53 | 404 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1p6w_A | 0 | 1 | 352 | 53 | 404 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1ht6_A | 0 | 1 | 352 | 53 | 404 | A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 |
PDB | 1rp9_A | 0 | 1 | 352 | 53 | 404 | A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 |
PDB | 1rp8_A | 0 | 1 | 352 | 53 | 404 | A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1) Inactive Mutant D180a In Complex With Maltoheptaose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1823 | EC-3.2.1.1 | α-amylase |
starch degradation I | RXN-1825 | EC-3.2.1.1 | α-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL870903 | 274 | 60 | 333 | 0 |
FL868122 | 251 | 36 | 286 | 0 |
FL870200 | 249 | 60 | 308 | 0 |
FE603063 | 248 | 114 | 361 | 0 |
FL875645 | 239 | 70 | 308 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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