| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00043679m |
| Family | CBM22 |
| Protein Properties | Length: 747 Molecular Weight: 81594.1 Isoelectric Point: 5.1845 |
| Chromosome | Chromosome/Scaffold: 030676 Start: 2746 End: 5309 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 17 | 159 | 1.5e-30 |
| NIILNPEFDDGLDSWAGNGCKIELHDALDDGKVLPASGKYFVAATGRTDTWNGVQQDVTARMQRKLLYEATATVRLHAPAGGGGAAVAPCEVRATLGLQT TDGRQQYLGVGKVQVSDKEWVQLQGKILLNSTPAKASIYIEGP | |||
| CBM22 | 194 | 339 | 7.2e-39 |
| NIIQNSNLDDGLNGWFPLGPCTLSVHDGAPRVLPPMARESLMERDEEPLNGKHIHVTNRTQPWMGPAQIVTDRLTLYATYQASAWVRVGAQAAGAPQNIN VAVAVDSQWINGGQVLARDERWYEVGGAFRVEATPASRVMVYVQGP | |||
| GH10 | 401 | 686 | 0 |
| LQVSNSFPLGSCIMRTNMDNEDFVDFFTKNFNWAVFGNELKWYWTEPQRGQVSYSDADDLLRLCSDHGLCVRGHCIFWEVDGAVQQWVKTLPADELSAAV KSRLTGLLTRYKGKFRHYDVNNEMLHGSFYQDKLGEGIRAAMFRTAAELDPDALLFVNDYNVESMCDVRATPEAYIQQIVGLQEQGAPVGGVGLQGHVSS PAGPVIRSVLDRLAVLGLPVWFTEVDVSSANEHVRADDLEVVLREAYAHPAVEGVVLWGFWELFMSRDDAQLVDAEGQVNEAGRRL | |||
| Full Sequence |
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| Protein Sequence Length: 747 Download |
| MAIGGDAAGL VVAGDDNIIL NPEFDDGLDS WAGNGCKIEL HDALDDGKVL PASGKYFVAA 60 TGRTDTWNGV QQDVTARMQR KLLYEATATV RLHAPAGGGG AAVAPCEVRA TLGLQTTDGR 120 QQYLGVGKVQ VSDKEWVQLQ GKILLNSTPA KASIYIEGPP AGVDVLLDSL VVKHAQRAPP 180 APAPDFEKLE YGANIIQNSN LDDGLNGWFP LGPCTLSVHD GAPRVLPPMA RESLMERDEE 240 PLNGKHIHVT NRTQPWMGPA QIVTDRLTLY ATYQASAWVR VGAQAAGAPQ NINVAVAVDS 300 QWINGGQVLA RDERWYEVGG AFRVEATPAS RVMVYVQGPD AGVDLMVAGL QVFPVDRKAR 360 VKHLRRLTDK VRKRDVVLKV TTGGAGERDD PAGGGVEVRV LQVSNSFPLG SCIMRTNMDN 420 EDFVDFFTKN FNWAVFGNEL KWYWTEPQRG QVSYSDADDL LRLCSDHGLC VRGHCIFWEV 480 DGAVQQWVKT LPADELSAAV KSRLTGLLTR YKGKFRHYDV NNEMLHGSFY QDKLGEGIRA 540 AMFRTAAELD PDALLFVNDY NVESMCDVRA TPEAYIQQIV GLQEQGAPVG GVGLQGHVSS 600 PAGPVIRSVL DRLAVLGLPV WFTEVDVSSA NEHVRADDLE VVLREAYAHP AVEGVVLWGF 660 WELFMSRDDA QLVDAEGQVN EAGRRLLQLK REWLTHAHGR ADDSGEFRFR GHHGEYHVEV 720 TTPTGKISQT FTVDKDDAPL VLNIKV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 5.0e-13 | 193 | 341 | 157 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 1.0e-17 | 17 | 161 | 146 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 1.0e-29 | 391 | 660 | 292 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-76 | 404 | 690 | 307 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-79 | 440 | 686 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY91350.1 | 0 | 1 | 746 | 1 | 756 | hypothetical protein OsI_12971 [Oryza sativa Indica Group] |
| RefSeq | NP_001050876.1 | 0 | 1 | 746 | 1 | 756 | Os03g0672900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002301133.1 | 0 | 14 | 746 | 332 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 16 | 352 | 1 | 314 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002466685.1 | 0 | 2 | 746 | 3 | 748 | hypothetical protein SORBIDRAFT_01g012210 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 1e-32 | 391 | 660 | 21 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 1e-32 | 391 | 660 | 21 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1nq6_A | 8e-30 | 438 | 681 | 44 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1x_A | 3e-28 | 430 | 659 | 39 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1w_A | 3e-28 | 430 | 659 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EL428755 | 280 | 407 | 686 | 0 |
| EX570690 | 295 | 453 | 747 | 0 |
| EX570691 | 281 | 453 | 733 | 0 |
| HO789518 | 279 | 446 | 724 | 0 |
| GR184067 | 268 | 409 | 676 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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