Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00044154m |
Family | CBM43 |
Protein Properties | Length: 338 Molecular Weight: 36361.1 Isoelectric Point: 5.0061 |
Chromosome | Chromosome/Scaffold: 0382880 Start: 3 End: 1105 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 268 | 338 | 4.8e-27 |
WCVPKPGADEMMLQENIDFACGQEGVDCAAIRPGGVCYEPDTLQGHAAYAMNLYFQSNGQHVFDCDFGQTA | |||
GH17 | 1 | 243 | 0 |
VRENVAPYARATNISRLLVGNEVTTEANRTLLLALAPAMQNLHTALAAASLHARIKVSTTHSLGVLTTTEQPSAARFRDGYDAAIVKPLLRFLRATGAPF LVNAYPFYGLTGDTLDFALFRVNAGVVDQGSGLVYTNMLDAQLDAVHSAIRRLGFGDVDIAVSETGWPSAGEDWEVGVGADLARDYNKNAIRHLGSGVGT PLMPNRTFEVSIFSLFDENLKPGPVSERNFGLFRGDMTPVYDA |
Full Sequence |
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Protein Sequence Length: 338 Download |
VRENVAPYAR ATNISRLLVG NEVTTEANRT LLLALAPAMQ NLHTALAAAS LHARIKVSTT 60 HSLGVLTTTE QPSAARFRDG YDAAIVKPLL RFLRATGAPF LVNAYPFYGL TGDTLDFALF 120 RVNAGVVDQG SGLVYTNMLD AQLDAVHSAI RRLGFGDVDI AVSETGWPSA GEDWEVGVGA 180 DLARDYNKNA IRHLGSGVGT PLMPNRTFEV SIFSLFDENL KPGPVSERNF GLFRGDMTPV 240 YDAGIFTAPE TVVPVSTKVT PAAGRRQWCV PKPGADEMML QENIDFACGQ EGVDCAAIRP 300 GGVCYEPDTL QGHAAYAMNL YFQSNGQHVF DCDFGQTA |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 8.0e-23 | 267 | 338 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-34 | 267 | 338 | 72 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-65 | 1 | 242 | 248 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAJ86292.1 | 0 | 1 | 337 | 851 | 1200 | H0124B04.9 [Oryza sativa (indica cultivar-group)] |
GenBank | EEC78268.1 | 0 | 1 | 337 | 547 | 896 | hypothetical protein OsI_17962 [Oryza sativa Indica Group] |
GenBank | EEE61922.1 | 0 | 1 | 337 | 547 | 876 | hypothetical protein OsJ_16662 [Oryza sativa Japonica Group] |
RefSeq | NP_001151529.1 | 0 | 1 | 337 | 101 | 434 | LOC100285163 [Zea mays] |
RefSeq | XP_002448791.1 | 0 | 1 | 337 | 103 | 448 | hypothetical protein SORBIDRAFT_06g033250 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 1.4013e-45 | 1 | 242 | 73 | 309 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 4.99983e-42 | 1 | 242 | 73 | 303 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 4.99983e-42 | 1 | 242 | 73 | 303 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_B | 9.99995e-41 | 1 | 241 | 74 | 310 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_A | 9.99995e-41 | 1 | 241 | 74 | 310 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CA110861 | 194 | 68 | 259 | 0 |
EG504152 | 287 | 54 | 337 | 0 |
EG504149 | 282 | 54 | 332 | 0 |
CA112398 | 196 | 68 | 261 | 0 |
CA103690 | 171 | 174 | 337 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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