Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00044311m |
Family | GH28 |
Protein Properties | Length: 346 Molecular Weight: 37562.6 Isoelectric Point: 7.3832 |
Chromosome | Chromosome/Scaffold: 037740 Start: 4102 End: 6581 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 27 | 326 | 0 |
STFEGIDRLHVLGGGTLNGNVQQWWINSCKVNRSMRASAMSFSVGDLQAIYFRRCTHLVVEDLEVRDSMQMHVAIAYSWNVLVSKLFIAAPGWSPNTTLS VVFFSHTTSAAASSTSTANRVVSNSKEVSISDCTISTVSAGDDCISIVTGSMFVRVTDIFCGPGHGKSIGSLGLGANNSWACVSDVLVEKATLLGTTNGV RIKTWQGGYGYAERITFQDISMHNVTNPVIIDQNYCNSDKPCHEQGSAIAVRNIHYKNIYGTSASKVAINFICSEAIRCDGIQMQDIYLVGEGRYATCSY |
Full Sequence |
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Protein Sequence Length: 346 Download |
GKSYLLMPVS FPWPPAELSR SLQWSGSTFE GIDRLHVLGG GTLNGNVQQW WINSCKVNRS 60 MRASAMSFSV GDLQAIYFRR CTHLVVEDLE VRDSMQMHVA IAYSWNVLVS KLFIAAPGWS 120 PNTTLSVVFF SHTTSAAASS TSTANRVVSN SKEVSISDCT ISTVSAGDDC ISIVTGSMFV 180 RVTDIFCGPG HGKSIGSLGL GANNSWACVS DVLVEKATLL GTTNGVRIKT WQGGYGYAER 240 ITFQDISMHN VTNPVIIDQN YCNSDKPCHE QGSAIAVRNI HYKNIYGTSA SKVAINFICS 300 EAIRCDGIQM QDIYLVGEGR YATCSYRNAT VVQLGYNFPF CSAEM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-51 | 29 | 339 | 317 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-52 | 1 | 326 | 348 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-71 | 28 | 326 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-73 | 1 | 342 | 361 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-83 | 1 | 315 | 333 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53778.1 | 0 | 1 | 345 | 100 | 437 | unknown [Zea mays] |
GenBank | EAY89054.1 | 0 | 1 | 345 | 106 | 411 | hypothetical protein OsI_10538 [Oryza sativa Indica Group] |
GenBank | EAZ26072.1 | 0 | 1 | 345 | 106 | 411 | hypothetical protein OsJ_09925 [Oryza sativa Japonica Group] |
RefSeq | NP_001150245.1 | 0 | 1 | 345 | 100 | 437 | polygalacturonase [Zea mays] |
RefSeq | XP_002468269.1 | 0 | 1 | 345 | 66 | 398 | hypothetical protein SORBIDRAFT_01g042735 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 0.00000000000001 | 168 | 330 | 188 | 346 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1czf_B | 0.0000000001 | 168 | 324 | 201 | 353 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.0000000001 | 168 | 324 | 201 | 353 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 0.000000001 | 168 | 325 | 176 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000001 | 168 | 325 | 176 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CI116764 | 161 | 186 | 346 | 0 |
EE093402 | 277 | 29 | 305 | 0 |
EE091344 | 274 | 42 | 315 | 0 |
EC945774 | 273 | 44 | 316 | 0 |
EH756941 | 270 | 75 | 341 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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