CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00044467m
FamilyGH43
Protein PropertiesLength: 287 Molecular Weight: 32553.6 Isoelectric Point: 5.1517
ChromosomeChromosome/Scaffold: 037693 Start: 3966 End: 5088
Descriptionglycosyl hydrolase family protein 43
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH4392052.1e-35
  GVSCYSSKDLWTWKNEGVVLQGEEKNVTHDLHKSNVLERPKVIYNDRTSKYVMWMHIDDANYTKASVGVAVSDSPTGPFTYLYSKRPHDCESRDMTIFKD
  DDGKAYLIYSSEDNSELHIGPLTDDYLDVADEMRRFLIAQHGEAPALFKHEGTYYMVTSGCTGWAPNTALAHAATSVMGPWETLGNPCVGGNEVFRS
Full Sequence
Protein Sequence     Length: 287     Download
MIFQVDIIGV SCYSSKDLWT WKNEGVVLQG EEKNVTHDLH KSNVLERPKV IYNDRTSKYV    60
MWMHIDDANY TKASVGVAVS DSPTGPFTYL YSKRPHDCES RDMTIFKDDD GKAYLIYSSE    120
DNSELHIGPL TDDYLDVADE MRRFLIAQHG EAPALFKHEG TYYMVTSGCT GWAPNTALAH    180
AATSVMGPWE TLGNPCVGGN EVFRSTTFFS QSTFVLPVPG LPGSFIFMAD RWNPSDLRDS    240
RYVWLPLTIG GVPDEAADYS FMFPLWSRVS IYWHKRWRLP EGWRDS* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd09004GH43_bXyl3.0e-2111194196+
cd08990GH43_AXH_like7.0e-2412190193+
cd08978GH_F7.0e-436249255+
cd08985GH43_62.0e-1159249242+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACG45031.104286186467glycosyl hydrolase, family 43 protein [Zea mays]
GenBankEEE53089.104286482764hypothetical protein OsJ_35850 [Oryza sativa Japonica Group]
RefSeqNP_001066630.104286184466Os12g0406100 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001151925.104286186467glycosyl hydrolase, family 43 protein [Zea mays]
RefSeqXP_002468324.104286185467hypothetical protein SORBIDRAFT_01g043810 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3vt2_F0727183346A Chain A, Arabidopsis Thaliana Peroxidase A2
PDB3vt2_E0727183346A Chain A, Arabidopsis Thaliana Peroxidase A2
PDB3vt2_D0727183346A Chain A, Arabidopsis Thaliana Peroxidase A2
PDB3vt2_C0727183346A Chain A, Arabidopsis Thaliana Peroxidase A2
PDB3vt2_B0727183346A Chain A, Arabidopsis Thaliana Peroxidase A2
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
JG86468427342760
GO80175328442870
JG877590258302870
JG790147248362830
JG902142238502870
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_060_00007.3Aquca_060_00007.1Aquca_060_00007.2
Arabidopsis lyrata906305332819
Arabidopsis thalianaAT5G67540.2AT5G67540.1AT3G49880.1
Brachypodium distachyonBradi2g50980.2Bradi1g71160.1Bradi2g50980.1
Brassica rapaBra024441Bra029980Bra036036
Capsella rubellaCarubv10027885mCarubv10019437m
Citrus clementinaCiclev10025553mCiclev10025552mCiclev10025561m
Citrus sinensisorange1.1g011114morange1.1g012300morange1.1g012453m
Cucumis sativusCucsa.366970.1Cucsa.366990.1
Eucalyptus grandisEucgr.I00703.2Eucgr.I00703.1Eucgr.H02307.1
Fragaria vescamrna05759.1-v1.0-hybrid
Glycine maxGlyma05g22470.3Glyma17g17390.3Glyma17g17390.2Glyma17g17390.1Glyma05g22470.6
Glyma05g22470.5Glyma05g22470.4Glyma05g22470.2Glyma01g40190.1Glyma11g05100.1
Gossypium raimondiiGorai.011G214500.1Gorai.008G083400.1Gorai.003G030500.1Gorai.003G030500.2
Linum usitatissimumLus10011543Lus10019280
Malus domesticaMDP0000248963MDP0000503275MDP0000406084
Manihot esculentacassava4.1_032973mcassava4.1_007150mcassava4.1_007066m
Medicago truncatulaMedtr5g015460.1Medtr4g097110.1
Mimulus guttatusmgv1a018781mmgv1a005746m
Oryza sativaLOC_Os12g21789.1LOC_Os12g21789.2LOC_Os01g65720.1
Panicum virgatumPavirv00010178mPavirv00067870mPavirv00058950m
Physcomitrella patensPp1s410_9V6.1Pp1s16_243V6.1
Phaseolus vulgarisPhvul.003G234900.1Phvul.002G010600.1
Picea abiesMA_181765g0010
Populus trichocarpaPotri.005G148800.1Potri.005G148800.2
Prunus persicappa005306m
Ricinus communis48021.m00001434138.m00001529661.m000924
Setaria italicaSi001388mSi035531m
Selaginella moellendorffii44066110234
Sorghum bicolorSb03g041630.1Sb01g043810.1
Thellungiella halophilaThhalv10004148mThhalv10010347m
Vitis viniferaGSVIVT01000105001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny