| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00044566m |
| Family | AA1 |
| Protein Properties | Length: 252 Molecular Weight: 27580.2 Isoelectric Point: 6.0135 |
| Chromosome | Chromosome/Scaffold: 0258404 Start: 586 End: 1693 |
| Description | laccase 7 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA1 | 2 | 237 | 0 |
| DTATAFRFLSNLTALVLPGKPTVPLSVDTRMFVTVGLGNGDCQPKQTLCNTTDGTRPRIFSSSMNNASFLLPDAGSPSMLQAHYDGNASGVYTRDFPDRP PVIFDYTADASDTDELKYTTKSTKVRTLRYNETVEMVLQNTRLIAKESHPMHLHGFNFFVLAQGFGNYDEAAAAPGFKFNLVNPQERNTVAVPTGGWAVI RFVANNPGMWFMHCHFDAHLDLGLGMVFEVQDGPTV | |||
| Full Sequence |
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| Protein Sequence Length: 252 Download |
| HDTATAFRFL SNLTALVLPG KPTVPLSVDT RMFVTVGLGN GDCQPKQTLC NTTDGTRPRI 60 FSSSMNNASF LLPDAGSPSM LQAHYDGNAS GVYTRDFPDR PPVIFDYTAD ASDTDELKYT 120 TKSTKVRTLR YNETVEMVLQ NTRLIAKESH PMHLHGFNFF VLAQGFGNYD EAAAAPGFKF 180 NLVNPQERNT VAVPTGGWAV IRFVANNPGM WFMHCHFDAH LDLGLGMVFE VQDGPTVETS 240 VPPPPLDLPH C* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02191 | PLN02191 | 2.0e-26 | 64 | 229 | 172 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 1.0e-30 | 51 | 230 | 184 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 1.0e-34 | 64 | 230 | 170 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| pfam07731 | Cu-oxidase_2 | 2.0e-43 | 96 | 235 | 143 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| TIGR03389 | laccase | 1.0e-91 | 2 | 251 | 251 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA97328.1 | 0 | 1 | 251 | 413 | 657 | laccase family protein, putative [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC78752.1 | 0 | 1 | 251 | 332 | 576 | hypothetical protein OsI_18967 [Oryza sativa Indica Group] |
| GenBank | EEE62822.1 | 0 | 2 | 251 | 300 | 543 | hypothetical protein OsJ_17625 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066518.1 | 0 | 1 | 251 | 332 | 576 | Os12g0259800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002442097.1 | 0 | 1 | 251 | 332 | 576 | hypothetical protein SORBIDRAFT_08g011530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 2e-24 | 101 | 229 | 393 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asq_A | 2e-24 | 101 | 229 | 393 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asp_B | 2e-24 | 101 | 229 | 393 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asp_A | 2e-24 | 101 | 229 | 393 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1aso_B | 2e-24 | 101 | 229 | 393 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL884779 | 205 | 1 | 205 | 0 |
| EG377960 | 233 | 20 | 251 | 0 |
| FL884778 | 175 | 78 | 252 | 0 |
| GD020578 | 176 | 77 | 252 | 0 |
| FL884779 | 22 | 204 | 225 | 0.042 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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