| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00044843m |
| Family | CBM43 |
| Protein Properties | Length: 454 Molecular Weight: 47375.4 Isoelectric Point: 7.1497 |
| Chromosome | Chromosome/Scaffold: 025806 Start: 1549 End: 3250 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH17 | 49 | 143 | 3.4e-29 |
| LGVNYGTVADDLPSAARSVQLLRAAGAGAVKIYDANPGILRALAGTGLPVAIMVPNAAIPSLASSRAAAEDWVAANLAPHSPATRVMYLLVGNEV | |||
| CBM43 | 360 | 447 | 8.8e-31 |
| WCVLAAGGGKAADGKAVQDALDYACQQGSGTCDAIQPGGACHEPDTLDAHASYAFNSYWQQFRNRGGTCSFNGLAETTTKDPSYGSCK | |||
| GH17 | 143 | 335 | 0 |
| VKLSTTLAMGALSASYPPSAGAFRDDVAGDVIRPLLRFLKATRSFYFVDAYPYFAWAANRDAISLDYALFQGAASSHYVDPGTGHTYTNLLDQMLDAVVA AMGKLGYGDVKLAVAETGWPSAGGAGANVRNAATYNRNLAARMSKNPGTPARPGAKMPVFLFSLYNEDQKPGAGTERHWWLYYPNQTKVYEID | |||
| Full Sequence |
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| Protein Sequence Length: 454 Download |
| MAGATVAPSS SHRAVVVLLL AAALACHLNI VAVAVKPECS CPGGKCRGLG VNYGTVADDL 60 PSAARSVQLL RAAGAGAVKI YDANPGILRA LAGTGLPVAI MVPNAAIPSL ASSRAAAEDW 120 VAANLAPHSP ATRVMYLLVG NEVKLSTTLA MGALSASYPP SAGAFRDDVA GDVIRPLLRF 180 LKATRSFYFV DAYPYFAWAA NRDAISLDYA LFQGAASSHY VDPGTGHTYT NLLDQMLDAV 240 VAAMGKLGYG DVKLAVAETG WPSAGGAGAN VRNAATYNRN LAARMSKNPG TPARPGAKMP 300 VFLFSLYNED QKPGAGTERH WWLYYPNQTK VYEIDLTGQR SSRSYPPLPP ADDTDSSAAW 360 CVLAAGGGKA ADGKAVQDAL DYACQQGSGT CDAIQPGGAC HEPDTLDAHA SYAFNSYWQQ 420 FRNRGGTCSF NGLAETTTKD PSYGSCKFLS SED* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 3.0e-14 | 360 | 434 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-32 | 360 | 448 | 89 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-92 | 49 | 335 | 316 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN29077.1 | 0 | 101 | 453 | 1 | 384 | unknown [Zea mays] |
| DDBJ | BAF24208.2 | 0 | 48 | 442 | 32 | 467 | Os08g0525800 [Oryza sativa Japonica Group] |
| GenBank | EAZ07710.1 | 0 | 48 | 443 | 32 | 468 | hypothetical protein OsI_29967 [Oryza sativa Indica Group] |
| RefSeq | NP_001062294.1 | 0 | 35 | 442 | 18 | 467 | Os08g0525800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002444717.1 | 0 | 6 | 453 | 1 | 484 | hypothetical protein SORBIDRAFT_07g026540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 49 | 336 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 49 | 336 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 49 | 336 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 49 | 336 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 49 | 336 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
