Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00044941m |
Family | GH14 |
Protein Properties | Length: 598 Molecular Weight: 66828.2 Isoelectric Point: 5.7294 |
Chromosome | Chromosome/Scaffold: 025907 Start: 3050 End: 8132 |
Description | beta-amylase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 443 | 562 | 4.4e-32 |
QIPSIYWWYRTASHAAELTAGFYNPTNRDGYSPVLKMLKKHSIILKLVCYGAEFTVQENDEAFADPEGLTWQVMNAAWDHGLPLCIESALPCLDGDMYSQ ILDTAKPRNDPDRHHASFFA | |||
GH14 | 182 | 444 | 0 |
ASLPMGIINSHCQLVDPEGVRAELRHLKSLNVDGVVVDCWWGIVEAWIPRKYEWSGYRDLFGIIKEFKLKVQVVLSFHGSGETGSGDVLISLPKWIMEIA KENQDIFFTDREGRRNTECLSWGIDKERVLRGRTGIEVYFDFMRSFHTEFRNLSEEGLISAIEIGLGASGELRYPSFPARMGWKYPGIGEFQCYDRYMQK NLRQSALSRGHLFWARGPDNAGYYNSRPHETGFFCDGGDYDSYYGRFFLNWYSGILIDHVDQI |
Full Sequence |
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Protein Sequence Length: 598 Download |
AAAEAGRAGA GAGEGADELR ERHRRAITSR MLAGLRQHGN FPLPARADMN DVLAALARAA 60 GWTVHPDGTT FRSSNQPPPL PPPPQLGMFQ VASGDTPAFI NALNSYAIGT PLDSQASALQ 120 TDDSLSPSSL DSVVAERSIK TENFGNSSSV NSLNCMDNNQ LLRSSAMLAG DYTKTPYIPV 180 YASLPMGIIN SHCQLVDPEG VRAELRHLKS LNVDGVVVDC WWGIVEAWIP RKYEWSGYRD 240 LFGIIKEFKL KVQVVLSFHG SGETGSGDVL ISLPKWIMEI AKENQDIFFT DREGRRNTEC 300 LSWGIDKERV LRGRTGIEVY FDFMRSFHTE FRNLSEEGLI SAIEIGLGAS GELRYPSFPA 360 RMGWKYPGIG EFQCYDRYMQ KNLRQSALSR GHLFWARGPD NAGYYNSRPH ETGFFCDGGD 420 YDSYYGRFFL NWYSGILIDH VDQIPSIYWW YRTASHAAEL TAGFYNPTNR DGYSPVLKML 480 KKHSIILKLV CYGAEFTVQE NDEAFADPEG LTWQVMNAAW DHGLPLCIES ALPCLDGDMY 540 SQILDTAKPR NDPDRHHASF FAYRQQPPFL LQRDACYPEL RTFVKCMHGE APQNGED* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00197 | PLN00197 | 1.0e-101 | 178 | 587 | 434 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 3.0e-117 | 178 | 548 | 393 | + beta-amylase | ||
PLN02801 | PLN02801 | 1.0e-138 | 177 | 590 | 438 | + beta-amylase | ||
PLN02705 | PLN02705 | 0 | 18 | 590 | 594 | + beta-amylase | ||
PLN02905 | PLN02905 | 0 | 18 | 591 | 607 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI29216.1 | 0 | 18 | 590 | 20 | 605 | unnamed protein product [Vitis vinifera] |
GenBank | EAY84334.1 | 0 | 49 | 593 | 1 | 561 | hypothetical protein OsI_05709 [Oryza sativa Indica Group] |
GenBank | EAZ21608.1 | 0 | 161 | 588 | 88 | 530 | hypothetical protein OsJ_05236 [Oryza sativa Japonica Group] |
RefSeq | XP_002270680.1 | 0 | 18 | 590 | 78 | 663 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002451472.1 | 0 | 18 | 515 | 48 | 563 | hypothetical protein SORBIDRAFT_04g002450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdq_A | 0 | 177 | 590 | 11 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1wds_A | 0 | 177 | 590 | 11 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
PDB | 1wdp_A | 0 | 177 | 590 | 11 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
PDB | 1q6c_A | 0 | 177 | 590 | 11 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 177 | 590 | 11 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO329361 | 220 | 136 | 355 | 0 |
FL862801 | 234 | 382 | 598 | 0 |
EB439624 | 285 | 224 | 491 | 0 |
CJ908248 | 223 | 225 | 447 | 0 |
CJ908112 | 221 | 227 | 447 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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