Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00044964m |
Family | CE8 |
Protein Properties | Length: 292 Molecular Weight: 31444.3 Isoelectric Point: 9.3204 |
Chromosome | Chromosome/Scaffold: 026507 Start: 1804 End: 3341 |
Description | pectinesterase 11 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 11 | 283 | 0 |
TVDWSGRGDHRRVQDAVDAAPANSSAGSVVIRIKPGVYREKVVVDKPGVTLVGTSASSIVITWNESWVAADSPTVSVLAPDFIAKRLTFQNTFGTSGPAV AMRVAGDRAAFYGCRFVSFQDTLLDDTGRHYYRGCYIEGGTDFVFGNARALFDKCHLHSTSLVGGAFTAQKRSAESENTGFSYVGCKLTGVGKGTSILGR PWGPYSRVVFALSYMSSTVRPEGWDDWSNPAKQSSTGNGQYQCYGEGSKTDGRVAWSRALSQAEAAPFLTKVW |
Full Sequence |
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Protein Sequence Length: 292 Download |
MPGPRRQLVL TVDWSGRGDH RRVQDAVDAA PANSSAGSVV IRIKPGVYRE KVVVDKPGVT 60 LVGTSASSIV ITWNESWVAA DSPTVSVLAP DFIAKRLTFQ NTFGTSGPAV AMRVAGDRAA 120 FYGCRFVSFQ DTLLDDTGRH YYRGCYIEGG TDFVFGNARA LFDKCHLHST SLVGGAFTAQ 180 KRSAESENTG FSYVGCKLTG VGKGTSILGR PWGPYSRVVF ALSYMSSTVR PEGWDDWSNP 240 AKQSSTGNGQ YQCYGEGSKT DGRVAWSRAL SQAEAAPFLT KVWVGGKEWL Q* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 5.0e-81 | 9 | 291 | 303 | + probable pectinesterase | ||
PLN02773 | PLN02773 | 6.0e-82 | 9 | 280 | 290 | + pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-87 | 9 | 290 | 296 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-102 | 8 | 291 | 306 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-172 | 6 | 291 | 288 | + putative pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF05574.2 | 0 | 8 | 291 | 41 | 325 | Os01g0634600 [Oryza sativa Japonica Group] |
EMBL | CAN79458.1 | 0 | 8 | 291 | 44 | 326 | hypothetical protein [Vitis vinifera] |
GenBank | EEC71149.1 | 0 | 8 | 291 | 41 | 330 | hypothetical protein OsI_02978 [Oryza sativa Indica Group] |
RefSeq | NP_001043660.1 | 0 | 8 | 291 | 4 | 293 | Os01g0634600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002458207.1 | 0 | 6 | 291 | 9 | 301 | hypothetical protein SORBIDRAFT_03g028930 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.4013e-45 | 10 | 291 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-37 | 12 | 291 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 1e-19 | 21 | 278 | 19 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-19 | 21 | 278 | 19 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 1e-19 | 21 | 278 | 19 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CJ554400 | 222 | 70 | 290 | 0 |
AM722128 | 263 | 1 | 258 | 0 |
AM721699 | 260 | 1 | 255 | 0 |
BM140477 | 180 | 82 | 261 | 0 |
BJ235223 | 188 | 15 | 199 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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