| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00045198m |
| Family | GH35 |
| Protein Properties | Length: 475 Molecular Weight: 51319.4 Isoelectric Point: 8.2939 |
| Chromosome | Chromosome/Scaffold: 025689 Start: 4555 End: 7427 |
| Description | beta galactosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 1 | 89 | 1.8e-37 |
| MWTEAWSGWFTAFGKPVPHRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFDRTSGGPFIATSYDYDAPIDEYGLLRQPKWGHLRDLHK | |||
| Full Sequence |
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| Protein Sequence Length: 475 Download |
| MWTEAWSGWF TAFGKPVPHR PVEDLAFAVA RFIQKGGSFV NYYMYHGGTN FDRTSGGPFI 60 ATSYDYDAPI DEYGLLRQPK WGHLRDLHKA IKQAEPALVA GDPTVQSLGN YEKAYVFKSS 120 GGACAAFLSN YKTDAAATVA FNGRRYELPA WSISVLPDCK TAVFNTATVR APSAPARMSS 180 AAAGLSWRSY SEATNALDDR AFTKDGLVEQ LSMTWDKSDY LWYTTYVNID SNEQFLKLGK 240 WPQLTIYSAG HALQVFVNGQ SYGSAYGGYD SPKLTYSGYV KMWQGSNKIS ILSAAVGLPN 300 QGTHYETWNV GVLGPVTLSG LNEGKRDLSS QKWTYQIGLH GESLGVYSAA GSSSVQWGGA 360 AGNQPLTWHK AYFDVPAGGA PVALDLGSMG KGQAWVNGRH VGRYWSYRAP GGGCGGCGYA 420 GTYGETKCQS GCGDISQRYY HVPRAWLNPS GNLLVLLEEF GGDLSGVTVV TRTA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01301 | Glyco_hydro_35 | 2.0e-41 | 1 | 91 | 94 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 1 | 473 | 477 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG29716.1 | 0 | 25 | 474 | 1 | 450 | beta-galactosidase precursor [Zea mays] |
| GenBank | ACG30563.1 | 0 | 1 | 474 | 250 | 723 | beta-galactosidase precursor [Zea mays] |
| GenBank | EAZ01416.1 | 0 | 1 | 473 | 246 | 716 | hypothetical protein OsI_23450 [Oryza sativa Indica Group] |
| RefSeq | NP_001130532.1 | 0 | 1 | 474 | 250 | 722 | hypothetical protein LOC100191631 [Zea mays] |
| RefSeq | XP_002437187.1 | 0 | 1 | 473 | 253 | 724 | hypothetical protein SORBIDRAFT_10g022620 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 0.00000001 | 1 | 87 | 236 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.002 | 244 | 406 | 400 | 547 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.00000002 | 1 | 74 | 235 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 0.00000002 | 1 | 74 | 235 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778160 | 479 | 1 | 473 | 0 |
| CO452768 | 264 | 19 | 282 | 0 |
| HO780602 | 409 | 1 | 405 | 0 |
| FL856572 | 261 | 141 | 401 | 0 |
| HO780602 | 35 | 427 | 461 | 0.00003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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