Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00046032m |
Family | GH3 |
Protein Properties | Length: 590 Molecular Weight: 62697.2 Isoelectric Point: 10.1659 |
Chromosome | Chromosome/Scaffold: 0136384 Start: 406 End: 2741 |
Description | beta-xylosidase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 15 | 170 | 0 |
NETPGEDPAVSSRYAAAYVRGLQQQDRRSGGGLKLAACCKHFTAYDLDRWGGTDRFHFNAVVAPQDLEDTFNAPFRACVRDGGAAAVMCSYNQVNGVPTC ADQAFLKGTIRRQWGLDGYIVSDCDSVGVLFRDQRYTRTAEDAAAAALRAGLDLDC |
Full Sequence |
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Protein Sequence Length: 590 Download |
MYNGGAAGLT FWSPNETPGE DPAVSSRYAA AYVRGLQQQD RRSGGGLKLA ACCKHFTAYD 60 LDRWGGTDRF HFNAVVAPQD LEDTFNAPFR ACVRDGGAAA VMCSYNQVNG VPTCADQAFL 120 KGTIRRQWGL DGYIVSDCDS VGVLFRDQRY TRTAEDAAAA ALRAGLDLDC GPFLAQYTEP 180 ALAAGKLSDA DVDAALLNTV AVQVRLGMFD GDPAAGPFGH LGPRDVCAPP HQELALEAAR 240 QSVVLLKNDK GKHRAGVLPL RPAAHRVVAV VGPHAEATVA MIGNYAGKPC RYTTPLRGVA 300 GYVKQAVHQA GCADVACAGG QQPIAAAVDA ARRADATIVV AGLDQNVEAE GLDRSSLLLP 360 GRQAELISAV AKAAKGPVVL VLMSGGPIDI AFALNDPRIA AILWAGYPGQ AGGQAIADVI 420 FGHHNPGGKL PMTWYPQEYL QKAPMTNMAM RANPKTGTPA GPTASTRARR SSRSATGSAT 480 PSSRTRWRTR RRSSPCSSPA ATPPPPRRRS PTRRDPAAAP APCAWRTRAA RAWPCRCTWT 540 CGTSAAATAR TRCSCTTRPR GAPWPARRRG SWWRSRRCTC RRAAWRAWR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00933 | Glyco_hydro_3 | 3.0e-30 | 15 | 195 | 181 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 5.0e-33 | 19 | 276 | 260 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 7.0e-47 | 243 | 446 | 208 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 3.0e-47 | 19 | 433 | 449 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 2.0e-176 | 1 | 454 | 473 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA95273.1 | 0 | 1 | 459 | 236 | 702 | Beta-D-xylosidase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACG29242.1 | 0 | 1 | 459 | 1 | 476 | auxin-induced beta-glucosidase [Zea mays] |
GenBank | EAY81823.1 | 0 | 1 | 459 | 236 | 702 | hypothetical protein OsI_36995 [Oryza sativa Indica Group] |
RefSeq | NP_001145980.1 | 0 | 1 | 459 | 140 | 615 | hypothetical protein LOC100279508 [Zea mays] |
RefSeq | XP_002451244.1 | 0 | 1 | 459 | 147 | 608 | hypothetical protein SORBIDRAFT_05g026400 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 3.99931e-42 | 15 | 434 | 144 | 569 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
PDB | 3u48_A | 3.99931e-42 | 15 | 434 | 144 | 569 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
PDB | 3u4a_B | 1.99993e-41 | 15 | 434 | 144 | 569 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
PDB | 3u4a_A | 1.99993e-41 | 15 | 434 | 144 | 569 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
PDB | 2x41_A | 5e-23 | 16 | 439 | 133 | 551 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL863713 | 246 | 1 | 233 | 0 |
FL905868 | 235 | 42 | 276 | 0 |
GW867089 | 307 | 16 | 322 | 0 |
GW867487 | 324 | 96 | 419 | 0 |
DY274096 | 321 | 47 | 367 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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