CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00046059m
FamilyGH16
Protein PropertiesLength: 298 Molecular Weight: 32742.6 Isoelectric Point: 4.825
ChromosomeChromosome/Scaffold: 0135647 Start: 699 End: 1992
Descriptionxyloglucan endotransglucosylase/hydrolase 1
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH16362173.6e-26
  ENYAVQWGADGYHLVIRGTEANITMDQSSGAGFRSKSMYGSGFFHMRMKLPSGYTAGVVTTFYLISQPEDGSRDEVDFEFLGDKAGVPVTLQTNVFVNGR
  GDREQRLHLWFDPAADFHDYKILWNPYQLVVFVDDTPIRVLRNLTATVPGYPFPARQTMLIRASVWDGSGWATDGGRTKVDW
Full Sequence
Protein Sequence     Length: 298     Download
MGSKAACPWL DYLLVVVVVL LVAAAGSAAA EAAFDENYAV QWGADGYHLV IRGTEANITM    60
DQSSGAGFRS KSMYGSGFFH MRMKLPSGYT AGVVTTFYLI SQPEDGSRDE VDFEFLGDKA    120
GVPVTLQTNV FVNGRGDREQ RLHLWFDPAA DFHDYKILWN PYQLVVFVDD TPIRVLRNLT    180
ATVPGYPFPA RQTMLIRASV WDGSGWATDG GRTKVDWSQG PFTAGYRGFD VSGCASNGSA    240
TPPCGSPDLW WNGGDYRNIT AEQRAAYEDV KKNYMNYDYC ADKGRFNNTV PVECNYA*      300
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd00413Glyco_hydrolase_161.0e-1839217192+
cd02183GH16_fungal_CRH1_transglycosylase5.0e-2091231155+
pfam00722Glyco_hydro_162.0e-5934218186+
PLN03161PLN031612.0e-7434294265+
cd02176GH16_XET4.0e-13534294262+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005618cell wall
GO:0005975carbohydrate metabolic process
GO:0006073cellular glucan metabolic process
GO:0016762xyloglucan:xyloglucosyl transferase activity
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
RefSeqNP_001057249.1034296483747Os06g0237400 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001150467.103129737302xyloglucan endotransglucosylase/hydrolase protein 1 [Zea mays]
RefSeqXP_002438131.103429735290hypothetical protein SORBIDRAFT_10g008540 [Sorghum bicolor]
RefSeqXP_002438132.1012971293hypothetical protein SORBIDRAFT_10g008550 [Sorghum bicolor]
RefSeqXP_002521076.10102941283Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1un1_B0242957273A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From Bifidobacterium Longum Subsp. Infantis Atcc 15697
PDB1un1_A0242957273A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From Bifidobacterium Longum Subsp. Infantis Atcc 15697
PDB1umz_B0242957273A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg.
PDB1umz_A0242957273A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg.
PDB2uwb_B02729413267A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig
Transmembrane Domains
StartEnd
1234
Signal Peptide
Cleavage Site
29
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
CJ655637221342520
CJ655203195342260
CJ547849226752970
CO116549266342940
ES827892266342940
Orthologous Group
SpeciesID
Arabidopsis lyrata884593899104485216359038359039
883627883616
Arabidopsis thalianaAT4G13090.1AT3G25050.1AT3G48580.1AT4G13080.1
Brachypodium distachyonBradi1g44777.1Bradi1g71937.1
Brassica rapaBra001434Bra015093Bra001433
Carica papayaevm.model.supercontig_8.136
Capsella rubellaCarubv10016385mCarubv10005358mCarubv10006916mCarubv10006944mCarubv10018461m
Citrus clementinaCiclev10033360mCiclev10023425m
Citrus sinensisorange1.1g042925morange1.1g041460m
Cucumis sativusCucsa.067150.1
Eucalyptus grandisEucgr.H00787.1Eucgr.H00788.1Eucgr.K02717.1Eucgr.K02715.1
Fragaria vescamrna17598.1-v1.0-hybrid
Glycine maxGlyma18g35720.2Glyma18g35720.1Glyma08g46450.1
Gossypium raimondiiGorai.007G155700.1Gorai.004G226400.1
Linum usitatissimumLus10032879Lus10025919Lus10038182Lus10022784Lus10011845
Lus10022782
Malus domesticaMDP0000311020
Manihot esculentacassava4.1_032567m
Medicago truncatulaMedtr2g049030.1Medtr2g049130.1
Mimulus guttatusmgv1a010995mmgv1a011712mmgv1a020473mmgv1a011649mmgv1a025665m
mgv1a019895mmgv1a020281mmgv1a021895mmgv1a011700mmgv1a010970m
Oryza sativaLOC_Os06g13040.1
Panicum virgatumPavirv00069636mPavirv00044296m
Phaseolus vulgarisPhvul.008G129900.1Phvul.008G129100.1
Picea abiesMA_300041g0010MA_10083496g0010MA_254951g0010
Populus trichocarpaPotri.002G244200.1
Prunus persicappa019741mppa027154m
Ricinus communis30204.m00174129904.m002924
Setaria italicaSi007117mSi006999m
Selaginella moellendorffii403283
Sorghum bicolorSb10g008540.1Sb10g008550.1
Thellungiella halophilaThhalv10002629mThhalv10010620mThhalv10026812m
Vitis viniferaGSVIVT01003280001GSVIVT01004746001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny