| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00046245m |
| Family | GH5 |
| Protein Properties | Length: 404 Molecular Weight: 44903.5 Isoelectric Point: 5.4212 |
| Chromosome | Chromosome/Scaffold: 0135238 Start: 130 End: 2876 |
| Description | |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH5 | 118 | 388 | 1.09301e-43 |
| PVLRDHWNTYIVEDDFKFIASSGLTAVRIPVGWWIASDPNPPAPYVGGSLQALDNAFKWAEKYKLGVIIDLHAAPGSQNPWEHSSSRDGTQEWGTTDANI AQTVQVIEFLASRYATSPSLFAVELMNEPLAPRATLESLTRYYRDGYDAVRRHSPAAYVVMSNRLSGNKTELLPFAAGLQGAVIDVHYYTVFNSMFSNFT VQQNIDFVRTNFSGELAAVTTQNGPLTFVEWKVPNATKEEYQKYAAAQMSVYGQATFGWSYWTVKNANNHW | |||
| Full Sequence |
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| Protein Sequence Length: 404 Download |
| MLQLWRINET TFNFRAPGGQ FVGIGASDGI IVATATAPAL PETFQIVRCP FDKDRVRIKA 60 ANGYFVQAIA TGEVIADYGE PTRWSDWDAS VFLMTKVGQQ LQGEYQLCNG YGTDKAAPVL 120 RDHWNTYIVE DDFKFIASSG LTAVRIPVGW WIASDPNPPA PYVGGSLQAL DNAFKWAEKY 180 KLGVIIDLHA APGSQNPWEH SSSRDGTQEW GTTDANIAQT VQVIEFLASR YATSPSLFAV 240 ELMNEPLAPR ATLESLTRYY RDGYDAVRRH SPAAYVVMSN RLSGNKTELL PFAAGLQGAV 300 IDVHYYTVFN SMFSNFTVQQ NIDFVRTNFS GELAAVTTQN GPLTFVEWKV PNATKEEYQK 360 YAAAQMSVYG QATFGWSYWT VKNANNHWDL EWMIKNGYIS LKG* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00257 | Fascin | 0.0007 | 10 | 85 | 78 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
| pfam00150 | Cellulase | 3.0e-14 | 108 | 385 | 286 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG2730 | BglC | 4.0e-28 | 99 | 247 | 151 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY97220.1 | 0 | 2 | 402 | 116 | 517 | hypothetical protein OsI_19139 [Oryza sativa Indica Group] |
| GenBank | EEE62967.1 | 0 | 2 | 402 | 116 | 545 | hypothetical protein OsJ_17774 [Oryza sativa Japonica Group] |
| RefSeq | NP_001055011.1 | 0 | 2 | 402 | 116 | 524 | Os05g0244500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150774.1 | 0 | 2 | 403 | 131 | 539 | cellulase containing protein [Zea mays] |
| RefSeq | XP_002440848.1 | 0 | 2 | 403 | 132 | 539 | hypothetical protein SORBIDRAFT_09g008170 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1eqp_A | 2e-33 | 104 | 397 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
| PDB | 2pb1_A | 2e-33 | 104 | 397 | 51 | 382 | A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex With Unhydrolysed And Covalently Linked 2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside At 1.9 A |
| PDB | 2pbo_A | 3e-33 | 104 | 397 | 51 | 382 | A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A |
| PDB | 1eqc_A | 3e-33 | 104 | 397 | 45 | 376 | A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A |
| PDB | 1cz1_A | 3e-33 | 104 | 397 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FE600548 | 262 | 62 | 322 | 0 |
| DR966519 | 260 | 152 | 404 | 0 |
| CA077122 | 264 | 134 | 391 | 0 |
| FL939589 | 215 | 65 | 279 | 0 |
| EG388670 | 281 | 57 | 336 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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