| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00046362m |
| Family | GT31 |
| Protein Properties | Length: 509 Molecular Weight: 57066.3 Isoelectric Point: 7.8649 |
| Chromosome | Chromosome/Scaffold: 0131961 Start: 253 End: 3107 |
| Description | Galactosyltransferase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT31 | 276 | 459 | 0 |
| ERMAIRKTWMQFPAIKLGNVVARFFVALSHRKEINAALKKEAEYFGDIVILPFIDRYELVVLKTVAICQYGVQNVTADYIMKCDDDTFVRLDIVLQQITT YNRTLPLYLGNLNLLHRPLRSGKWAVTYEEWPEAVYPPYANGPGYVLSIDIARDIASRHANHSLRLFKMEDVSMGMWVEDYNAT | |||
| Full Sequence |
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| Protein Sequence Length: 509 Download |
| AGEDPAECPG SLALGGGEAA AAAFLPCGLA AGSAVTVVGT ARAARPEYVE ALERSGAGNG 60 TVMVAQFAVE LRGLRAADGE EPPRILHLNP RLRGDWSGRP VLEMNTCFRM QWGRAQRCDG 120 TPSRDDDQVD GFRKCEKWQR QDIVESKETK TSSWFNRFIG RAKKPEMTWP FPFSEGKMFV 180 LTIQAGVEGY HINVGGRHVA SFPHRMGFAL EDATGLAVTG GIDVHYVYAT ALPRAHPSFS 240 LQQVLEMSEK WKSRPVPEEL IQLFVGILSA TNHFAERMAI RKTWMQFPAI KLGNVVARFF 300 VALSHRKEIN AALKKEAEYF GDIVILPFID RYELVVLKTV AICQYGVQNV TADYIMKCDD 360 DTFVRLDIVL QQITTYNRTL PLYLGNLNLL HRPLRSGKWA VTYEEWPEAV YPPYANGPGY 420 VLSIDIARDI ASRHANHSLR LFKMEDVSMG MWVEDYNATA AVQYVHSWRF CQFGCVDNYF 480 TAHYQSPRQM LCLWDKLSAG RARCCNYR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00070 | GLECT | 1.0e-14 | 85 | 227 | 143 | + Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation. | ||
| smart00908 | Gal-bind_lectin | 5.0e-15 | 66 | 227 | 162 | + Galactoside-binding lectin. Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction. | ||
| pfam00337 | Gal-bind_lectin | 5.0e-18 | 66 | 227 | 162 | + Galactoside-binding lectin. This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5). | ||
| pfam01762 | Galactosyl_T | 2.0e-26 | 275 | 456 | 190 | + Galactosyltransferase. This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2. | ||
| PLN03133 | PLN03133 | 2.0e-110 | 63 | 508 | 455 | + beta-1,3-galactosyltransferase; Provisional | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA99401.2 | 0 | 2 | 508 | 152 | 658 | Galactosyltransferase family, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC69670.1 | 0 | 2 | 508 | 152 | 658 | hypothetical protein OsI_39103 [Oryza sativa Indica Group] |
| GenBank | EEE53604.1 | 0 | 2 | 508 | 88 | 594 | hypothetical protein OsJ_36860 [Oryza sativa Japonica Group] |
| RefSeq | NP_001130382.1 | 0 | 1 | 508 | 143 | 648 | hypothetical protein LOC100191478 [Zea mays] |
| RefSeq | XP_002442535.1 | 0 | 1 | 508 | 159 | 618 | hypothetical protein SORBIDRAFT_08g021470 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x50_A | 0.009 | 172 | 227 | 102 | 156 | A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin Domain From Human Galectin-4 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FF350910 | 286 | 47 | 332 | 0 |
| DV028358 | 271 | 100 | 370 | 0 |
| JK575827 | 263 | 225 | 487 | 0 |
| CJ631559 | 279 | 220 | 495 | 0 |
| CB681746 | 274 | 144 | 417 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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