Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00046422m |
Family | CBM43 |
Protein Properties | Length: 492 Molecular Weight: 53148.2 Isoelectric Point: 4.8607 |
Chromosome | Chromosome/Scaffold: 013731 Start: 656 End: 2523 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 374 | 455 | 2.3e-24 |
WCVVNTESPNMDKLADNINFACTFADCTALGYGSTCGGMDSNGNASYAFNAFFQMKDQDDQSCDFQGLARPTQTDPSTPACN | |||
GH17 | 31 | 351 | 0 |
LGMNWGTQATHPLSPKVVVQMLKDNGIKKVKLFDADQGTLSALAGSGIEVMVAIPNVLLDRITDYDTAKEWVRHNVSRYNFDGGVTIKYVAVGNEPFLAA YNGTFDKVTFPALQNIQNALDEAGLGDTIKATVPLNADVYMSPADNPVPSAGRWRPDIADLMTQMVQFLSNHSAPFTVNIYPFISLFLNDNFPVDFAFFD GGATPVVDNGVSYTNVFDANFDTLVAALKASGHGDMPIVVGEVGWPTDGDKHATNAYAQRFYSGLLKRLAANTGTPVRPNQYIEVYLFGLLDEDVKSVAP GNFERHWGVLRYDGQPKFPMD |
Full Sequence |
---|
Protein Sequence Length: 492 Download |
MANLAAVRPW LCLLAAMAAA SWSGVATVDA LGMNWGTQAT HPLSPKVVVQ MLKDNGIKKV 60 KLFDADQGTL SALAGSGIEV MVAIPNVLLD RITDYDTAKE WVRHNVSRYN FDGGVTIKYV 120 AVGNEPFLAA YNGTFDKVTF PALQNIQNAL DEAGLGDTIK ATVPLNADVY MSPADNPVPS 180 AGRWRPDIAD LMTQMVQFLS NHSAPFTVNI YPFISLFLND NFPVDFAFFD GGATPVVDNG 240 VSYTNVFDAN FDTLVAALKA SGHGDMPIVV GEVGWPTDGD KHATNAYAQR FYSGLLKRLA 300 ANTGTPVRPN QYIEVYLFGL LDEDVKSVAP GNFERHWGVL RYDGQPKFPM DLTGQGQNTM 360 LVPARGVEYL SRTWCVVNTE SPNMDKLADN INFACTFADC TALGYGSTCG GMDSNGNASY 420 AFNAFFQMKD QDDQSCDFQG LARPTQTDPS TPACNFTIQI ATTSAAGHRR PRRVAAAAAV 480 LFLAQLMILL H* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 8.0e-5 | 225 | 343 | 125 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 4.0e-18 | 373 | 442 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-30 | 373 | 456 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-69 | 31 | 351 | 323 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29689.1 | 0 | 30 | 466 | 20 | 458 | glucan endo-1,3-beta-glucosidase 5 precursor [Zea mays] |
RefSeq | NP_001051526.1 | 0 | 29 | 470 | 32 | 472 | Os03g0792800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130924.1 | 0 | 30 | 466 | 21 | 459 | hypothetical protein LOC100192029 [Zea mays] |
RefSeq | XP_002459388.1 | 0 | 30 | 466 | 28 | 465 | hypothetical protein SORBIDRAFT_02g003910 [Sorghum bicolor] |
RefSeq | XP_002463758.1 | 0 | 1 | 470 | 1 | 473 | hypothetical protein SORBIDRAFT_01g005610 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 31 | 353 | 2 | 316 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3f55_C | 0 | 31 | 353 | 2 | 316 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3f55_B | 0 | 31 | 353 | 2 | 316 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3f55_A | 0 | 31 | 353 | 2 | 316 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3em5_D | 0 | 31 | 353 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |