Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00046526m |
Family | CE8 |
Protein Properties | Length: 324 Molecular Weight: 34747.6 Isoelectric Point: 5.019 |
Chromosome | Chromosome/Scaffold: 013570 Start: 1510 End: 2963 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 32 | 313 | 0 |
IFVSRNGSADFESVQRAVDSVPFGNGQWIRVHVAAGVYNEKVIIPQNKSFILLEGEGRQQTSIEWADHAGGDSSTADSPTFAAHSADFVARDITFKNSYG GTAPAVAALVSGDRSSFYRCGFVGVQDTLGDMDGRHYYEACYIEGATDFIFGDGQSIFQGCDIRTAPTPVSSPGFITAQGRQSEADTSGFVFRGCTVRGD TPAYLGRAWRRYARVIFYRTDMSGVVVGQGWDAWDYKGREETLTMVEAGCTGQGSNRTERVPWTKALSDGELAKFVDLSYIS |
Full Sequence |
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Protein Sequence Length: 324 Download |
MALAAALAVL ASMAAVLPRG RCDAAGTVAR TIFVSRNGSA DFESVQRAVD SVPFGNGQWI 60 RVHVAAGVYN EKVIIPQNKS FILLEGEGRQ QTSIEWADHA GGDSSTADSP TFAAHSADFV 120 ARDITFKNSY GGTAPAVAAL VSGDRSSFYR CGFVGVQDTL GDMDGRHYYE ACYIEGATDF 180 IFGDGQSIFQ GCDIRTAPTP VSSPGFITAQ GRQSEADTSG FVFRGCTVRG DTPAYLGRAW 240 RRYARVIFYR TDMSGVVVGQ GWDAWDYKGR EETLTMVEAG CTGQGSNRTE RVPWTKALSD 300 GELAKFVDLS YISGDGWLDA QPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-84 | 32 | 318 | 287 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-90 | 27 | 318 | 305 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 1.0e-92 | 30 | 320 | 302 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 3.0e-98 | 24 | 322 | 309 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 1.0e-120 | 26 | 322 | 307 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 30 | 322 | 43 | 341 | unnamed protein product [Vitis vinifera] |
GenBank | EAY73651.1 | 0 | 19 | 323 | 29 | 335 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
RefSeq | XP_002263748.1 | 0 | 3 | 322 | 8 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 32 | 322 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002455508.1 | 0 | 15 | 323 | 24 | 338 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 25 | 320 | 2 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-34 | 34 | 318 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 5e-17 | 42 | 271 | 18 | 288 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 5e-17 | 42 | 271 | 18 | 288 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 5e-17 | 42 | 271 | 18 | 288 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |