y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00046564m |
Family | GH5 |
Protein Properties | Length: 527 Molecular Weight: 58625.9 Isoelectric Point: 4.6487 |
Chromosome | Chromosome/Scaffold: 013585 Start: 5387 End: 8683 |
Description | |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 197 | 487 | 4.60046e-42 |
HGDYQLANGYGPDKAKSVFEEHRKNFVSGSDFSFISQNGINAVRIPVGWWIAYDPDPPAPFIGGSLNALDRAFHWAQIYGLKCIIDLHAAPGSQNGMEHS ASRDGSVDWPSEANIQKTLDVINFLAQRYADNPCLLGIELLNEPSAAAVPLDTLVSYYKTGYQIVRSYSDTAYVIFCQRIGNADPMELYQAYLGATNTVV DLHYYNLFDPYFEKLNATENIQFIYKNRLPQVQSLNSANGPLVFIGEWVNEWNVTNASQVQYQLFGNAQLQVYGEASFGWSYWTVKCNSVH |
Full Sequence |
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Protein Sequence Length: 527 Download |
MATRLPRAGL LVFAVLLAAF RLADSSTDNS SSKVRAVNLG GWLVVEGWIK PSLFDGVPNR 60 DMLDGTQVQL KSVGLQKYVC AGDGGGSNVT VDRDAASSWE TFKLWRISMN EFQFRCFNGQ 120 FLTASDGDVI SATADSPGDF ETFYIERNNT LLHIKLLNGS YLQVTDNNQL TSNYPSQPGW 180 DDAMATFEMT IVANNLHGDY QLANGYGPDK AKSVFEEHRK NFVSGSDFSF ISQNGINAVR 240 IPVGWWIAYD PDPPAPFIGG SLNALDRAFH WAQIYGLKCI IDLHAAPGSQ NGMEHSASRD 300 GSVDWPSEAN IQKTLDVINF LAQRYADNPC LLGIELLNEP SAAAVPLDTL VSYYKTGYQI 360 VRSYSDTAYV IFCQRIGNAD PMELYQAYLG ATNTVVDLHY YNLFDPYFEK LNATENIQFI 420 YKNRLPQVQS LNSANGPLVF IGEWVNEWNV TNASQVQYQL FGNAQLQVYG EASFGWSYWT 480 VKCNSVHWDY EWNIRNRYLI GGSLLISPNY MLLVGGCLMY LLSALT* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00257 | Fascin | 0.0009 | 65 | 145 | 81 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
cd00257 | Fascin | 2.0e-5 | 114 | 178 | 67 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
cd00257 | Fascin | 7.0e-7 | 66 | 173 | 109 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
pfam00150 | Cellulase | 5.0e-15 | 226 | 480 | 261 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 2.0e-26 | 195 | 497 | 334 | + Endoglucanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ07396.1 | 0 | 5 | 526 | 3 | 537 | hypothetical protein OsI_29647 [Oryza sativa Indica Group] |
RefSeq | NP_001062079.1 | 0 | 5 | 500 | 3 | 511 | Os08g0484100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002262875.1 | 0 | 12 | 522 | 56 | 568 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002438060.1 | 0 | 32 | 514 | 28 | 526 | hypothetical protein SORBIDRAFT_10g007500 [Sorghum bicolor] |
RefSeq | XP_002533566.1 | 0 | 32 | 499 | 15 | 485 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3n9k_A | 1e-27 | 199 | 404 | 50 | 257 | A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From Candida Albicans In Complex With Laminaritriose At 1.7 A |
PDB | 1eqp_A | 1e-27 | 199 | 404 | 45 | 252 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
PDB | 1eqc_A | 2e-27 | 199 | 404 | 45 | 252 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |