PlantCAZyme

CAZyme Information

Basic Information
Species	Panicum virgatum
Cazyme ID	Pavirv00046651m
Family	GH5
Protein Properties	Length: 466 Molecular Weight: 50074.4 Isoelectric Point: 10.1595
Chromosome	Chromosome/Scaffold: 013883 Start: 6676 End: 9809
Description	Glycosyl hydrolase superfamily protein
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering
Family	Start	End	Evalue
GH5	83	409	2.4e-30
NGNPFFANGFNAYWLMSLGADPAQRGKVTSALGQAAAAGLSVGRTWAFSDGGGNAALQYSPGRYNENTFQGLDFVLSEARKHGIKMILSLVNSYDSFGGR KQYVQWAREQGQSIGSDDEFFTNPVVKGFYKNHIKTVLTRVNTITGVAYKDDPTIMAWELMNEPRCPSDLSGRTLQSWIAEMAAHVKSIDGAHLLEAGLE GFYGASTPSRATAANPSGYQLGADFVANNRAPGIDFATVHAYPDQWLPGLDAPSQLRFLGAWLDAHVADARGALRMPLLVAEFGRSRRDPGISGDQQRDA VFGTVYGRVYESARAGGPAAGALFWQL

Full Sequence
Protein Sequence Length: 466 Download
QSFILLPNFI SIAIAGGHPR GETREIGRGN NTRRQLERIG HRRMRLRGAL ALLLLLCIHG 60 GRQGAAAGRD GFVRVQGTRF VLNGNPFFAN GFNAYWLMSL GADPAQRGKV TSALGQAAAA 120 GLSVGRTWAF SDGGGNAALQ YSPGRYNENT FQGLDFVLSE ARKHGIKMIL SLVNSYDSFG 180 GRKQYVQWAR EQGQSIGSDD EFFTNPVVKG FYKNHIKTVL TRVNTITGVA YKDDPTIMAW 240 ELMNEPRCPS DLSGRTLQSW IAEMAAHVKS IDGAHLLEAG LEGFYGASTP SRATAANPSG 300 YQLGADFVAN NRAPGIDFAT VHAYPDQWLP GLDAPSQLRF LGAWLDAHVA DARGALRMPL 360 LVAEFGRSRR DPGISGDQQR DAVFGTVYGR VYESARAGGP AAGALFWQLL AEGMDSYGDG 420 YEVVLGQASS TAGVIAKQSR RLQGLARAFA RASKHKQGHT GKGGN*

Full Sequence

Protein Sequence Length: 466 Download

QSFILLPNFI SIAIAGGHPR GETREIGRGN NTRRQLERIG HRRMRLRGAL ALLLLLCIHG    60
GRQGAAAGRD GFVRVQGTRF VLNGNPFFAN GFNAYWLMSL GADPAQRGKV TSALGQAAAA    120
GLSVGRTWAF SDGGGNAALQ YSPGRYNENT FQGLDFVLSE ARKHGIKMIL SLVNSYDSFG    180
GRKQYVQWAR EQGQSIGSDD EFFTNPVVKG FYKNHIKTVL TRVNTITGVA YKDDPTIMAW    240
ELMNEPRCPS DLSGRTLQSW IAEMAAHVKS IDGAHLLEAG LEGFYGASTP SRATAANPSG    300
YQLGADFVAN NRAPGIDFAT VHAYPDQWLP GLDAPSQLRF LGAWLDAHVA DARGALRMPL    360
LVAEFGRSRR DPGISGDQQR DAVFGTVYGR VYESARAGGP AAGALFWQLL AEGMDSYGDG    420
YEVVLGQASS TAGVIAKQSR RLQGLARAFA RASKHKQGHT GKGGN* 

Functional Domains Download unfiltered results here
Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG2730	BglC	0.001	126	247	122	+ Endoglucanase [Carbohydrate transport and metabolism]
COG3934	COG3934	1.0e-22	145	421	277	+ Endo-beta-mannanase [Carbohydrate transport and metabolism]

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ABF69949.1	0	56	451	12	399	(1-4)-beta-mannan endohydrolase (mannan endo-1,4-beta-mannosidase), putative [Musa acuminata]
GenBank	EEC71222.1	0	72	463	37	426	hypothetical protein OsI_03157 [Oryza sativa Indica Group]
RefSeq	NP_001145882.1	0	58	457	16	414	hypothetical protein LOC100279398 [Zea mays]
Swiss-Prot	Q0JKM9	0	72	463	37	426	MAN1_ORYSJ RecName: Full=Mannan endo-1,4-beta-mannosidase 1; AltName: Full=Beta-mannanase 1; AltName: Full=Endo-beta-1,4-mannanase 1; AltName: Full=OsMAN1; Flags: Precursor
RefSeq	XP_002456093.1	0	44	454	3	417	hypothetical protein SORBIDRAFT_03g030340 [Sorghum bicolor]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1rh9_A	0	69	446	3	373	A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato)
PDB	3pzq_A	0	81	421	21	356	A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato)
PDB	3pzo_A	0	81	421	21	356	A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato)
PDB	3pzn_A	0	81	421	21	356	A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato)
PDB	3pzm_A	0	81	421	21	356	A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato)

Hydropathy

EST Download unfiltered results here
Hit	Length	Start	End	EValue
DR963780	274	126	397	0
FL748943	227	168	394	0
HO798074	357	95	451	0
FL837557	232	196	427	0
FL748943	32	399	430	0.000000003

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_008_00275.1	Aquca_028_00132.1	Aquca_036_00154.1	Aquca_027_00015.1	Aquca_017_00156.1
	Aquca_036_00154.2	Aquca_008_00275.2	Aquca_010_00537.1	Aquca_023_00122.1	Aquca_023_00124.1
	Aquca_023_00123.1	Aquca_003_00212.1	Aquca_023_00122.2	Aquca_010_00537.3
Arabidopsis lyrata	491940	480902	349416	872461	887017
	470192	478424
Arabidopsis thaliana	AT4G28320.1	AT2G20680.1	AT5G01930.1	AT3G10890.1	AT5G66460.1
	AT1G02310.1	AT3G10900.1	AT3G30540.1
Brachypodium distachyon	Bradi2g49680.1	Bradi1g42770.1	Bradi4g44336.1	Bradi2g45790.1	Bradi3g57920.1
	Bradi1g03207.1	Bradi4g44336.2
Brassica rapa	Bra026266	Bra031137	Bra036493	Bra005662	Bra034151
	Bra036494	Bra033312	Bra012074	Bra001383
Carica papaya	evm.model.supercontig_34.173	evm.model.supercontig_86.73	evm.model.supercontig_6.153	evm.model.supercontig_57.52	evm.model.supercontig_21.96
Capsella rubella	Carubv10004854m	Carubv10013751m	Carubv10012718m	Carubv10016461m	Carubv10028560m
	Carubv10011405m	Carubv10015594m	Carubv10016343m
Chlamydomonas reinhardtii	Cre01.g048350.t1.2	g8002.t2	g8002.t1	Cre02.g098000.t1.2	g12094.t1
	Cre07.g337750.t1.3
Citrus clementina	Ciclev10015394m	Ciclev10011654m	Ciclev10001262m	Ciclev10020376m	Ciclev10023981m
	Ciclev10025631m
Citrus sinensis	orange1.1g014151m	orange1.1g014902m	orange1.1g014373m	orange1.1g012093m	orange1.1g014426m
	orange1.1g015179m	orange1.1g016140m	orange1.1g013811m	orange1.1g048104m
Cucumis sativus	Cucsa.119110.1	Cucsa.137700.1	Cucsa.342570.1	Cucsa.127590.1	Cucsa.237330.1
	Cucsa.237320.1
Eucalyptus grandis	Eucgr.A01823.1	Eucgr.E03950.1	Eucgr.K01032.1	Eucgr.A00780.1	Eucgr.K00548.1
	Eucgr.K00551.1	Eucgr.K00550.1	Eucgr.I02413.1	Eucgr.F02943.1	Eucgr.F01879.1
	Eucgr.K00551.3	Eucgr.K00551.2
Fragaria vesca	mrna17714.1-v1.0-hybrid	mrna05501.1-v1.0-hybrid	mrna15177.1-v1.0-hybrid	mrna13566.1-v1.0-hybrid	mrna22956.1-v1.0-hybrid
Glycine max	Glyma13g37250.1	Glyma12g33200.1	Glyma06g44750.1	Glyma12g12770.1	Glyma03g00440.3
	Glyma03g00440.2	Glyma03g00440.1	Glyma16g34630.3	Glyma16g34630.2	Glyma16g34630.1
	Glyma19g41090.1	Glyma09g41000.1	Glyma03g38490.1	Glyma18g44810.1	Glyma14g07930.1
	Glyma19g41410.2	Glyma17g37090.1	Glyma09g35840.1	Glyma01g37720.2	Glyma12g01510.1
	Glyma04g03270.1	Glyma06g03350.1	Glyma03g38840.1	Glyma11g07580.1	Glyma01g37720.1
Gossypium raimondii	Gorai.005G201100.1	Gorai.010G186400.2	Gorai.013G075700.1	Gorai.010G186400.1	Gorai.011G124800.1
	Gorai.010G186400.3	Gorai.009G200500.2	Gorai.009G200500.1	Gorai.007G119100.1	Gorai.007G119100.2
	Gorai.007G201600.1	Gorai.005G120600.1	Gorai.001G149200.1	Gorai.007G119100.3
Linum usitatissimum	Lus10033687	Lus10039833	Lus10031650	Lus10018598	Lus10039032
	Lus10027329	Lus10014184	Lus10014288	Lus10025995	Lus10007900
	Lus10030347	Lus10007210	Lus10007211
Malus domestica	MDP0000322330	MDP0000709705	MDP0000417632	MDP0000832632	MDP0000321839
	MDP0000120098	MDP0000252855	MDP0000281231	MDP0000309661
Manihot esculenta	cassava4.1_008068m	cassava4.1_027705m	cassava4.1_006893m	cassava4.1_008562m	cassava4.1_025176m
	cassava4.1_007999m	cassava4.1_032265m
Medicago truncatula	Medtr4g078230.1	Medtr8g005670.1	Medtr8g005270.1	Medtr7g111740.1	Medtr5g020890.1
	Medtr4g043760.1	Medtr1g085310.1	Medtr1g085350.1	Medtr1g085320.1
Mimulus guttatus	mgv1a007803m	mgv1a005866m	mgv1a005847m	mgv1a006272m	mgv1a025011m
	mgv1a020287m	mgv1a025294m	mgv1a023976m	mgv1a011066m	mgv1a022814m
Oryza sativa	LOC_Os01g54300.1	LOC_Os06g20620.1	LOC_Os12g02520.1	LOC_Os02g52800.1	LOC_Os01g47400.1
	LOC_Os05g25480.1	LOC_Os03g61280.2	LOC_Os03g61280.1	LOC_Os01g47400.2
Panicum virgatum	Pavirv00037971m	Pavirv00037189m	Pavirv00037030m	Pavirv00015019m	Pavirv00042163m
	Pavirv00011599m	Pavirv00048102m	Pavirv00047147m	Pavirv00040471m	Pavirv00030867m
	Pavirv00021810m	Pavirv00035248m
Physcomitrella patens	Pp1s180_63V6.1	Pp1s41_160V6.1	Pp1s23_181V6.2	Pp1s429_16V6.1	Pp1s22_64V6.1
	Pp1s53_47V6.2	Pp1s53_47V6.1	Pp1s23_181V6.1	Pp1s115_190V6.1	Pp1s5_225V6.1
	Pp1s83_137V6.1
Phaseolus vulgaris	Phvul.004G108000.1	Phvul.011G118900.1	Phvul.010G058300.2	Phvul.010G058300.1	Phvul.008G081200.1
	Phvul.001G219800.1	Phvul.009G059700.1	Phvul.002G033500.1	Phvul.001G012600.1	Phvul.001G223100.1
Picea abies	MA_10426380g0010	MA_6558g0010	MA_10427065g0010	MA_58990g0010	MA_894609g0010
	MA_955078g0010	MA_45718g0010	MA_111906g0010	MA_69814g0010	MA_11130g0010
	MA_110162g0010	MA_953274g0010	MA_38956g0010	MA_10358593g0010	MA_134938g0010
	MA_10432193g0010	MA_71720g0010
Populus trichocarpa	Potri.013G130400.1	Potri.006G009400.1	Potri.016G138600.1	Potri.006G109900.3	Potri.016G138600.2
	Potri.006G109900.2	Potri.006G109900.1	Potri.016G014800.1	Potri.005G229600.3	Potri.005G229600.2
	Potri.005G229600.1	Potri.005G120500.1	Potri.007G022000.2	Potri.007G022000.1	Potri.002G184500.1
Prunus persica	ppa005783m	ppa006029m	ppa020168m	ppa005992m	ppa005849m
Ricinus communis	29983.m003185	29724.m000832	29915.m000486	30170.m014073	30076.m004513
Setaria italica	Si006454m	Si001340m	Si019677m	Si001544m	Si010209m
	Si024351m	Si035445m	Si027540m
Selaginella moellendorffii	101148	101525	232427	234867
Sorghum bicolor	Sb03g034420.1	Sb10g011830.1	Sb01g006080.1	Sb04g034200.1	Sb03g030340.1
	Sb01g002630.1	Sb05g001260.1
Thellungiella halophila	Thhalv10025261m	Thhalv10001990m	Thhalv10013730m	Thhalv10020842m	Thhalv10004263m
	Thhalv10007769m
Vitis vinifera	GSVIVT01020553001	GSVIVT01003344001	GSVIVT01003349001	GSVIVT01030163001	GSVIVT01030165001
	GSVIVT01009746001	GSVIVT01037214001	GSVIVT01037215001	GSVIVT01037212001	GSVIVT01037213001
	GSVIVT01018923001	GSVIVT01037211001	GSVIVT01037216001
Volvox carteri	Vocar20006216m

Orthologous Group

Species

Aquilegia coerulea