Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00046668m |
Family | CBM43 |
Protein Properties | Length: 471 Molecular Weight: 50564.6 Isoelectric Point: 6.7817 |
Chromosome | Chromosome/Scaffold: 013791 Start: 7819 End: 10239 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 357 | 435 | 2.6e-22 |
WCVIDNNKDLSNVSASFSAACSNGDCTVLSPGGSCSGLGWPSNVSYAFNNYYQQHDQIEDSCDFNGQCLITTVDPSVDC | |||
GH17 | 29 | 335 | 0 |
PAASAVVQGLLLPNSVPRVRLAAASSDALSALAGTGVTVTVGVPDALLRPLASSTKAAAAWVHDNITRYASSVRFEYIAVGDEPFLLSHGQHFQPFVVPA AANIKKALTAAKLSTKIKVVVPCSTDTYQNASMLPSKASFRPDVNKTMGELLSFLSNNSLPFMVELDPFLSFQHHKNLSLDYYLFQLMSHPVKDGQNKYD NYFDASIDAVVTALTNAGFSDMDIIVGRAGWPTDGAVNATPAIAQSFMTGLVNHLAKKSGTPLRLKVLPVETYLFSLLDEDQRNTASGGYERHHGIFTFD GQAKYYA |
Full Sequence |
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Protein Sequence Length: 471 Download |
MLSNRRRPLP PFAPALLLLL PFLAVAPPPA ASAVVQGLLL PNSVPRVRLA AASSDALSAL 60 AGTGVTVTVG VPDALLRPLA SSTKAAAAWV HDNITRYASS VRFEYIAVGD EPFLLSHGQH 120 FQPFVVPAAA NIKKALTAAK LSTKIKVVVP CSTDTYQNAS MLPSKASFRP DVNKTMGELL 180 SFLSNNSLPF MVELDPFLSF QHHKNLSLDY YLFQLMSHPV KDGQNKYDNY FDASIDAVVT 240 ALTNAGFSDM DIIVGRAGWP TDGAVNATPA IAQSFMTGLV NHLAKKSGTP LRLKVLPVET 300 YLFSLLDEDQ RNTASGGYER HHGIFTFDGQ AKYYANIGQG PKSLENAPDV GYFPSKWCVI 360 DNNKDLSNVS ASFSAACSNG DCTVLSPGGS CSGLGWPSNV SYAFNNYYQQ HDQIEDSCDF 420 NGQCLITTVD PSVDCLFPLA IRTSAATSLH LTLANVSVFS FLGLHFLFIV * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.001 | 251 | 328 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-16 | 356 | 422 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-26 | 356 | 437 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-42 | 72 | 333 | 263 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95444.1 | 0 | 22 | 459 | 41 | 478 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACF78459.1 | 0 | 31 | 453 | 46 | 469 | unknown [Zea mays] |
GenBank | EEC75046.1 | 0 | 22 | 459 | 41 | 478 | hypothetical protein OsI_11151 [Oryza sativa Indica Group] |
RefSeq | NP_001130286.1 | 0 | 31 | 453 | 46 | 469 | hypothetical protein LOC100191380 [Zea mays] |
RefSeq | XP_002468022.1 | 0 | 31 | 450 | 46 | 466 | hypothetical protein SORBIDRAFT_01g038220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 28 | 336 | 14 | 314 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 3f55_C | 0 | 28 | 336 | 14 | 314 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 3f55_B | 0 | 28 | 336 | 14 | 314 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 3f55_A | 0 | 28 | 336 | 14 | 314 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 3em5_D | 0 | 28 | 336 | 14 | 314 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |