Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00046761m |
Family | GH28 |
Protein Properties | Length: 419 Molecular Weight: 43694.7 Isoelectric Point: 7.4594 |
Chromosome | Chromosome/Scaffold: 013597 Start: 3043 End: 4790 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 407 | 0 |
TAACGKEGAQTLTIPKGDYLTGPLNFSGPCKGSVTIQLDGNLLGTTDLKAYKTNWIEIQHVDNLVINGKGTIDGQGKQVWDNNKCAQKYDCKILPNSLVL DYVNNGTVSGITLLNSKFFHMNIFQCKGITVKDVTVTAPGDSPNTDGIHMGDSSKVTITGTTIGVGDDCISIGPGSTEINITGVTCGPGHGISVGSLGRY KDEKDVTDINVKDCTCKKSTNGVRIKSYEDAASTLTASKLHYENIAMEDVANPIIIDMKYCPNKICTKNGASKVTIKDVTFKNITGTSSTPEAVSLLCSD KLPCTGVTLDNVKVEFKGTNNKTMAVCNNAKGS |
Full Sequence |
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Protein Sequence Length: 419 Download |
MALSGDTMRV FFFLAMVVCA AHAAKEAPKG KDAKKGDSAA APGPSGGGGS SDISELGAKG 60 DGKTDCTKAL NDAWTAACGK EGAQTLTIPK GDYLTGPLNF SGPCKGSVTI QLDGNLLGTT 120 DLKAYKTNWI EIQHVDNLVI NGKGTIDGQG KQVWDNNKCA QKYDCKILPN SLVLDYVNNG 180 TVSGITLLNS KFFHMNIFQC KGITVKDVTV TAPGDSPNTD GIHMGDSSKV TITGTTIGVG 240 DDCISIGPGS TEINITGVTC GPGHGISVGS LGRYKDEKDV TDINVKDCTC KKSTNGVRIK 300 SYEDAASTLT ASKLHYENIA MEDVANPIII DMKYCPNKIC TKNGASKVTI KDVTFKNITG 360 TSSTPEAVSL LCSDKLPCTG VTLDNVKVEF KGTNNKTMAV CNNAKGSSTG CLKELACL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 5.0e-76 | 53 | 418 | 369 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-78 | 53 | 404 | 358 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-80 | 53 | 418 | 372 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-113 | 78 | 405 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-124 | 57 | 410 | 356 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ01276.1 | 0 | 8 | 418 | 4 | 413 | hypothetical protein OsI_23299 [Oryza sativa Indica Group] |
RefSeq | NP_001105432.1 | 0 | 1 | 418 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
Swiss-Prot | P35338 | 0 | 1 | 418 | 1 | 410 | PGLR2_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
RefSeq | XP_002437275.1 | 0 | 1 | 418 | 1 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
RefSeq | XP_002438528.1 | 0 | 1 | 418 | 1 | 422 | hypothetical protein SORBIDRAFT_10g021590 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 140 | 388 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-21 | 84 | 401 | 24 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 84 | 401 | 24 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 84 | 401 | 24 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-21 | 84 | 401 | 24 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |