Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00046994m |
Family | CE8 |
Protein Properties | Length: 250 Molecular Weight: 26128.7 Isoelectric Point: 9.189 |
Chromosome | Chromosome/Scaffold: 0134593 Start: 1272 End: 2958 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 80 | 250 | 0 |
IVVSQDGTGHSRTVQGAVDMVPAGNRRRVKILVRPGVYREKVTVPITKPFVSLIGMGTGRTVITWNARAADIDPSGHQVGTFYSASVAIEADYFCASHIT FENSAPAAPPGAVGQQAVALRLSGDKTMLYRCRILGTQDTLFDNIGRHYLYNCDIQGSIDFIFGNARSLYQ |
Full Sequence |
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Protein Sequence Length: 250 Download |
MAAAGRERRC VVRAAVVVLL LVAASVPTAA GGGADGFITW DDLSIPGAAA AVAGPRGVSD 60 GAAGGSGGVK ARARHDLETI VVSQDGTGHS RTVQGAVDMV PAGNRRRVKI LVRPGVYREK 120 VTVPITKPFV SLIGMGTGRT VITWNARAAD IDPSGHQVGT FYSASVAIEA DYFCASHITF 180 ENSAPAAPPG AVGQQAVALR LSGDKTMLYR CRILGTQDTL FDNIGRHYLY NCDIQGSIDF 240 IFGNARSLYQ |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 8.0e-45 | 82 | 248 | 173 | + pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-51 | 80 | 250 | 171 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-52 | 79 | 249 | 171 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-58 | 79 | 250 | 173 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 2.0e-68 | 80 | 250 | 173 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC82420.1 | 0 | 33 | 250 | 29 | 246 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
GenBank | EEE67559.1 | 0 | 33 | 250 | 29 | 245 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_001060235.1 | 0 | 33 | 250 | 29 | 245 | Os07g0607400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002463165.1 | 0 | 34 | 250 | 22 | 235 | hypothetical protein SORBIDRAFT_02g038910 [Sorghum bicolor] |
RefSeq | XP_002522727.1 | 0 | 8 | 250 | 25 | 256 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9e-30 | 80 | 250 | 9 | 168 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-21 | 81 | 250 | 6 | 164 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.00000000000003 | 110 | 249 | 63 | 212 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.0000000000003 | 91 | 250 | 19 | 186 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.0000000000003 | 91 | 250 | 19 | 186 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |