Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00047043m |
Family | GT47 |
Protein Properties | Length: 605 Molecular Weight: 68924 Isoelectric Point: 5.8339 |
Chromosome | Chromosome/Scaffold: 0136979 Start: 831 End: 3028 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 145 | 485 | 0 |
GGRYIYVHELPPRFNEDMLRDCEKLSVWTNMCRFMNNDGLGPPLSDEEGVFSSTGWYGTNQFSVDVIFGNRMKQYECLTKDSSIAAAVFVPFYAGFDIAR YLWGHNISTRDAASLDLVDWLMKKPEWNVMGGRDHFLVAGRITWDFRRLTEEESDWGSKLLFLPAAKNMSMLVVESSPWNSNDFGIPYPTYFHPAKDADV FLWQDRMRSLERPWLFSFAGAPRPGDPMSIREQLIDQCRSSSVCKLLECDLGESKCHSPSTIMKMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHP GSAYVQYTWHLPKNYTRYSVFIPEDDIRTRNASIEERLKSI |
Full Sequence |
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Protein Sequence Length: 605 Download |
MRRRSVLPSH HDDMEKGGGK PASSRLCFLA TLCAMFWVLI FYFHFAVVSN EPDAQAGGVR 60 IARARLQLPE PDGAARHDMP LEPPARASER PPPVTRPKEE EEEEEEKEEN PAAAARQEEA 120 PPKVAASYPF ERALKTAENK SDPCGGRYIY VHELPPRFNE DMLRDCEKLS VWTNMCRFMN 180 NDGLGPPLSD EEGVFSSTGW YGTNQFSVDV IFGNRMKQYE CLTKDSSIAA AVFVPFYAGF 240 DIARYLWGHN ISTRDAASLD LVDWLMKKPE WNVMGGRDHF LVAGRITWDF RRLTEEESDW 300 GSKLLFLPAA KNMSMLVVES SPWNSNDFGI PYPTYFHPAK DADVFLWQDR MRSLERPWLF 360 SFAGAPRPGD PMSIREQLID QCRSSSVCKL LECDLGESKC HSPSTIMKMF QSSLFCLQPQ 420 GDSYTRRSAF DSMLAGCIPV FFHPGSAYVQ YTWHLPKNYT RYSVFIPEDD IRTRNASIEE 480 RLKSIHPDVV KNMREEVINL IPRVIYADPR SKLETLKDAF DVSIEAIINK VTKLRRDIMA 540 GREDKDFIEE NSWKYSLLED GQRTIGPHQW DPFFSKPKEK GGDPNSSSAE AAKNSWKSEQ 600 RGQN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-71 | 143 | 485 | 359 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC74507.1 | 0 | 1 | 604 | 4 | 604 | hypothetical protein OsI_09988 [Oryza sativa Indica Group] |
RefSeq | NP_001048945.1 | 0 | 1 | 604 | 4 | 604 | Os03g0144800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147481.1 | 0 | 1 | 604 | 1 | 603 | xyloglucan galactosyltransferase KATAMARI 1 [Zea mays] |
Swiss-Prot | Q8H038 | 0 | 14 | 604 | 1 | 588 | KATAM_ORYSJ RecName: Full=Xyloglucan galactosyltransferase KATAMARI1 homolog |
RefSeq | XP_002468517.1 | 0 | 1 | 604 | 1 | 599 | hypothetical protein SORBIDRAFT_01g047270 [Sorghum bicolor] |