y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00047085m |
Family | PL1 |
Protein Properties | Length: 364 Molecular Weight: 39934.1 Isoelectric Point: 7.4263 |
Chromosome | Chromosome/Scaffold: 013877 Start: 1483 End: 2819 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 88 | 268 | 0 |
WIVFEVSGTIRLHSYLRVSSHKTIDGRGQRVVLTGKGLQLKTCHHVIVCNLVFEGGRGHDVDGIQIKPGSTNIWIDRCTLADYDDGLIDITRQSTDITVS RCHFARHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRSWGIYAVCASVEAQLVSQCNIYEA |
Full Sequence |
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Protein Sequence Length: 364 Download |
MDPPPPPPPL QQQQQPPHPR NPRGEGHGGV EMPYQDADHR LRALAGRAEG FGRPAIGGLH 60 GAVYHVTSLQ DDGPGSLREA CRAAEPLWIV FEVSGTIRLH SYLRVSSHKT IDGRGQRVVL 120 TGKGLQLKTC HHVIVCNLVF EGGRGHDVDG IQIKPGSTNI WIDRCTLADY DDGLIDITRQ 180 STDITVSRCH FARHDKTMLI GADPTHVGDR CIRVTIHHCF FDGTRQRHPR LRFGKVHLYN 240 NYTRSWGIYA VCASVEAQLV SQCNIYEAGG GPPKKTTVFK YMPEKAGDRE DTVAGSIRSE 300 GDAFLNGALP CLVGGPGGAA HEAVYRPEDY YQHWTMEPAS PALKDIIQLC AGWQPVPRPP 360 DDC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 1.0e-36 | 84 | 264 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 6.0e-43 | 57 | 272 | 235 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 7.0e-66 | 103 | 270 | 180 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN25563.1 | 0 | 18 | 362 | 26 | 365 | unknown [Zea mays] |
GenBank | EAY74463.1 | 0 | 13 | 360 | 26 | 362 | hypothetical protein OsI_02351 [Oryza sativa Indica Group] |
RefSeq | NP_001043284.1 | 0 | 8 | 360 | 21 | 362 | Os01g0546800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149991.1 | 0 | 18 | 362 | 24 | 363 | LOC100283618 [Zea mays] |
RefSeq | XP_002442919.1 | 0 | 32 | 361 | 40 | 364 | hypothetical protein SORBIDRAFT_08g004905 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 4.99997e-41 | 38 | 308 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 4.99997e-41 | 38 | 308 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-26 | 55 | 270 | 21 | 250 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 3e-23 | 103 | 266 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3vmw_A | 9e-22 | 85 | 279 | 46 | 260 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG177860 | 311 | 49 | 359 | 0 |
DN142172 | 224 | 59 | 282 | 0 |
DY275282 | 332 | 30 | 361 | 0 |
DW066041 | 307 | 53 | 359 | 0 |
CD441241 | 239 | 124 | 362 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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