| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00047147m |
| Family | GH5 |
| Protein Properties | Length: 302 Molecular Weight: 33621.2 Isoelectric Point: 5.9424 |
| Chromosome | Chromosome/Scaffold: 0137779 Start: 1161 End: 2661 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 58 | 300 | 4.9e-26 |
| ESGRPFVVHGFNTYWLMYFAADPATRPTVTAALAEAAHSGLNVCRTWALNDGGSRALQLKPFSYDEVFQALDFVISEARKHKIRLILSLCNNWKDYGGKA QYVRWGKEAGLDLTSDDDFFTDPTIKSYYKAFVKAVLTRINTITNGAYKDDPTILAWELINEPRCHSDPSGDALQAWIEEMPSYVKSIDPVHLLEIGVEG FYGPSTPELLHVNPDAYSGTVGTDFIRNHRALGIDLASIHIYS | |||
| Full Sequence |
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| Protein Sequence Length: 302 Download |
| MESHGIGWMC RPHVAPPLSA TPRVSLLRCI LLATCISVMP PDADEWAVVE RRGPHLLESG 60 RPFVVHGFNT YWLMYFAADP ATRPTVTAAL AEAAHSGLNV CRTWALNDGG SRALQLKPFS 120 YDEVFQALDF VISEARKHKI RLILSLCNNW KDYGGKAQYV RWGKEAGLDL TSDDDFFTDP 180 TIKSYYKAFV KAVLTRINTI TNGAYKDDPT ILAWELINEP RCHSDPSGDA LQAWIEEMPS 240 YVKSIDPVHL LEIGVEGFYG PSTPELLHVN PDAYSGTVGT DFIRNHRALG IDLASIHIYS 300 DT |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam12876 | Cellulase-like | 0.0008 | 203 | 255 | 62 | + Sugar-binding cellulase-like. This is a putative cellulase family. |
| COG3934 | COG3934 | 7.0e-22 | 88 | 261 | 174 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAH95489.1 | 0 | 46 | 302 | 9 | 266 | Os12g0117250 [Oryza sativa Japonica Group] |
| GenBank | EEC67554.1 | 0 | 46 | 301 | 9 | 262 | hypothetical protein OsI_34887 [Oryza sativa Indica Group] |
| GenBank | EEE52650.1 | 0 | 46 | 302 | 9 | 266 | hypothetical protein OsJ_35012 [Oryza sativa Japonica Group] |
| Swiss-Prot | Q2RBB1 | 0 | 46 | 301 | 9 | 262 | MAN7_ORYSJ RecName: Full=Mannan endo-1,4-beta-mannosidase 7; AltName: Full=Beta-mannanase 7; AltName: Full=Endo-beta-1,4-mannanase 7; AltName: Full=OsMAN7 |
| RefSeq | XP_002450155.1 | 0 | 39 | 302 | 1 | 268 | hypothetical protein SORBIDRAFT_05g001260 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 53 | 299 | 11 | 253 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 9.80909e-45 | 52 | 299 | 17 | 270 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 9.80909e-45 | 52 | 299 | 17 | 270 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 9.80909e-45 | 52 | 299 | 17 | 270 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 9.80909e-45 | 52 | 299 | 17 | 270 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HX195966 | 249 | 39 | 283 | 0 |
| DT747977 | 256 | 48 | 302 | 0 |
| HX182899 | 239 | 36 | 271 | 0 |
| CO521252 | 230 | 15 | 238 | 0 |
| DY974976 | 269 | 35 | 302 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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