Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00047686m |
Family | GH3 |
Protein Properties | Length: 546 Molecular Weight: 58303.8 Isoelectric Point: 6.2291 |
Chromosome | Chromosome/Scaffold: 016235 Start: 6916 End: 10243 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 83 | 336 | 0 |
AVPRLGVPAYKWWSEALHGVSDHGRGVHLSGPLRAATSFPQVILTAASFNPHLWYRIGQVIGVEARAVYNNGQAEGLTFWAPNINVFRDPRWGRGQETPG EDPTVAGKYAAVFVRGVQGYGISGPVNSTDLEASACCKHFTAYDLENWKGVTRYVFDAKVTAQDLEDTYNPPFKSCVEDGHASGIMCSYNRVNGVPTCAD YNLLSKTARQNWGFYGYITSDCDAVSIIHDAQGYAKTAEDAVADVLKAGMDVNC |
Full Sequence |
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Protein Sequence Length: 546 Download |
MGHRARSSPH VAAPAAALLL HLLTLAPHHA AVASNPPYTC GAGAPPNIPF CDTGLPIDRR 60 VGDLVARMTV AEKISQLGDE SPAVPRLGVP AYKWWSEALH GVSDHGRGVH LSGPLRAATS 120 FPQVILTAAS FNPHLWYRIG QVIGVEARAV YNNGQAEGLT FWAPNINVFR DPRWGRGQET 180 PGEDPTVAGK YAAVFVRGVQ GYGISGPVNS TDLEASACCK HFTAYDLENW KGVTRYVFDA 240 KVTAQDLEDT YNPPFKSCVE DGHASGIMCS YNRVNGVPTC ADYNLLSKTA RQNWGFYGYI 300 TSDCDAVSII HDAQGYAKTA EDAVADVLKA GMDVNCGSYV QQHGASALQQ GKITEQDIDR 360 ALHNLFAVRM RLGLFNGDPR RNRFGDIGPD QVCTQEHQDL ALEAALEGIV LLKNDGGALP 420 LSKSTVASLG VVGFNANDAT RLLGNYFGPP CATATPLQAL QGYVKDTRFA AGCNAAACNV 480 TAIPEAVRVA SSADAVVLFM GLDQDQEREE VDRLDLTLPG QQQSLIESVA RAAKKPVILV 540 LLCGGP |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-23 | 409 | 546 | 144 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 6.0e-49 | 58 | 546 | 566 | + beta-D-glucoside glucohydrolase; Provisional | ||
COG1472 | BglX | 8.0e-55 | 58 | 438 | 388 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 1.0e-61 | 69 | 361 | 323 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PLN03080 | PLN03080 | 0 | 34 | 546 | 518 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK38482.1 | 0 | 32 | 546 | 28 | 540 | beta-D-xylosidase [Hordeum vulgare] |
GenBank | EEC74020.1 | 0 | 36 | 546 | 28 | 536 | hypothetical protein OsI_08964 [Oryza sativa Indica Group] |
RefSeq | NP_001048140.1 | 0 | 43 | 546 | 39 | 542 | Os02g0752200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130324.1 | 0 | 1 | 546 | 1 | 545 | hypothetical protein LOC100191418 [Zea mays] |
RefSeq | XP_002452540.1 | 0 | 33 | 546 | 35 | 548 | hypothetical protein SORBIDRAFT_04g027700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 4.00001e-41 | 119 | 546 | 91 | 524 | A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole- Succinocarboxamide Synthase With Adp From Methanocaldococcus Jannaschii |
PDB | 3u48_A | 4.00001e-41 | 119 | 546 | 91 | 524 | A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole- Succinocarboxamide Synthase With Adp From Methanocaldococcus Jannaschii |
PDB | 3u4a_B | 9.99995e-41 | 119 | 546 | 91 | 524 | A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole- Succinocarboxamide Synthase With Adp From Methanocaldococcus Jannaschii |
PDB | 3u4a_A | 9.99995e-41 | 119 | 546 | 91 | 524 | A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole- Succinocarboxamide Synthase With Adp From Methanocaldococcus Jannaschii |
PDB | 4i3g_B | 7e-34 | 60 | 461 | 53 | 427 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |