| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00047844m |
| Family | GH116 |
| Protein Properties | Length: 973 Molecular Weight: 109116 Isoelectric Point: 7.1321 |
| Chromosome | Chromosome/Scaffold: 015683 Start: 1669 End: 9578 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH116 | 555 | 917 | 0 |
| GKFLYLEGVEYIMWNTYDVHFYASFALLDLFPKIELSIQRDFANAVLYEDQRKVKFLADGASGIRKVKGAVPHDLGTHDPWHEMNAYNIHDTSKWKDLNP KFVLQIYRDFAATGDMQFGRDVWPAVCAAMDYMDQFDRDHDGLIENDGFPDQTYDAWTVHGISAYCGCLWLGALQAAATMAHRLGDRHFAEKYKLKFIKA KAVYEAKLWNGSYFNYDSGTSSNSRSIQADQLAGQWYTASSGLPPLFDEHKIRTALQKIFEFNVIKVKGGRMGAVNGMTPKGKVDETCMQSREIWTGVTY AVAANMLLHGMEHQGFTTAEGIFIAGWSEEGYGYWFQTPEGWTTDGHYRSLVYMRPLAIWAIQ | |||
| Full Sequence |
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| Protein Sequence Length: 973 Download |
| MVSGHIFHYR RNSWPAEEYV GRTALQLLDF DGGAPPEQAW RRKLNCHANL LKEFSITFME 60 AMRMMTLGLR LWSYVREEAS HGRKAPIDPF TKERCRPSAS QGVPLGGMGS GSISRGFRGE 120 FKNWHIIPGL CESAPVMENQ FSIFVSRDGG NKKYSSVLAP GHHEGLKKKS DSGISSWDWN 180 LSGQHSTYHA LFPRAWTVYD GEPDPDLKIS CRQISPFIPH DYKDSSLPTS VFVYTLVNTG 240 KDRAKVSLLM TWANSIGGFS HNSGGHYNEP FIAEDGVSGV LLHHKTAKDN PPVTFAVAAC 300 ETQNVNVTVL PVFGLTGENH VSAKEMWNTM EQNGNFNREN FSAGPSMPSS PGQKLCAAVS 360 ASTWVEPHGR CTVAFALAWS SPKVKFQKGC TYNRRYTQFY GTSERSAVNL VHDALTKYKL 420 WEEEIEKWQN PILKDERLPE WYKFTLFNEL YFLVAGGTVW TDGQPPAIDE KASPGSKSSK 480 RGTKDTKVES VKDSHVNMTA EQVPDSGHMT NGDERSVSKF AAVHGSQMQE QTNGGLKSEE 540 PIPYLISKDG PENVGKFLYL EGVEYIMWNT YDVHFYASFA LLDLFPKIEL SIQRDFANAV 600 LYEDQRKVKF LADGASGIRK VKGAVPHDLG THDPWHEMNA YNIHDTSKWK DLNPKFVLQI 660 YRDFAATGDM QFGRDVWPAV CAAMDYMDQF DRDHDGLIEN DGFPDQTYDA WTVHGISAYC 720 GCLWLGALQA AATMAHRLGD RHFAEKYKLK FIKAKAVYEA KLWNGSYFNY DSGTSSNSRS 780 IQADQLAGQW YTASSGLPPL FDEHKIRTAL QKIFEFNVIK VKGGRMGAVN GMTPKGKVDE 840 TCMQSREIWT GVTYAVAANM LLHGMEHQGF TTAEGIFIAG WSEEGYGYWF QTPEGWTTDG 900 HYRSLVYMRP LAIWAIQYAL SPPKAILEAP KVNLMDRIHI SPHMARAISE ISIRKIAPDN 960 RCFPSFAFQC EC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3408 | GDB1 | 4.0e-10 | 623 | 787 | 185 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
| COG4354 | COG4354 | 2.0e-28 | 102 | 462 | 384 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 5.0e-61 | 102 | 421 | 331 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 4.0e-76 | 554 | 920 | 385 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 1.0e-171 | 555 | 918 | 368 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL31035.1 | 0 | 1 | 972 | 1 | 967 | AC078948_19 unknown protein [Oryza sativa Japonica Group] |
| GenBank | EEC67156.1 | 0 | 1 | 972 | 1 | 974 | hypothetical protein OsI_34005 [Oryza sativa Indica Group] |
| GenBank | EEE51125.1 | 0 | 1 | 972 | 1 | 935 | hypothetical protein OsJ_31868 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064833.1 | 0 | 1 | 972 | 1 | 974 | Os10g0473400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002518119.1 | 0 | 1 | 972 | 1 | 968 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT045992 | 339 | 621 | 959 | 0 |
| GO856558 | 337 | 629 | 965 | 0 |
| JG941203 | 301 | 571 | 871 | 0 |
| GO868913 | 330 | 539 | 868 | 0 |
| GT045437 | 318 | 117 | 434 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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