Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00047870m |
Family | CBM43 |
Protein Properties | Length: 600 Molecular Weight: 62690.4 Isoelectric Point: 7.0715 |
Chromosome | Chromosome/Scaffold: 016217 Start: 922 End: 3365 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 417 | 498 | 6.4e-34 |
WCVAKTGLTDLELQNGIDYACGIGQADCSAIQPMGACYNPNTLQAHASYAFNSYFQRNPSPTSCDFGGAGMLVNVNPSSGTC |
Full Sequence |
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Protein Sequence Length: 600 Download |
MAATFLLALT FFFCCILLET ISCSGAFVEF SYDSTKVKIL SSSVITEYRV VVTEKQRAYL 60 FLKPFECRRK PCRPEHLAGS FANEVLDPNR HLNASNIIVM AKERQLSALR RTLQSIHAYL 120 DAVGLGKSVK VSPELLQSSL KIMAKNRAQK KQWAKVMEFV RRSGSFVQLE IEANSEHTVD 180 AEIQEAVTDV AALLGTDAGV VLHLKSRAAP SAEAMTNLVG EITREKRLLG VLVDVSPPRR 240 ELGEARATAH DEFSPVTNPA TMPVANPVTV PATNPVSNPM SPGFVTVPST NPGNGFSTNP 300 NLPPLYPEPT TPVTMPDPTM MPPATTLFTS PVTAPTMPGP VTNPAAPVLN PATTPTQFPG 360 TSPVTNPVTT YPYPQQGGGV GVGAGAGGMP TTPVYQPPAT MPGTVQPGAP TVAGQTWCVA 420 KTGLTDLELQ NGIDYACGIG QADCSAIQPM GACYNPNTLQ AHASYAFNSY FQRNPSPTSC 480 DFGGAGMLVN VNPSSGTCMY QTSAGFGAGY SPGATGTAPT GYTPGMSGAV PAGYSPGWTG 540 SMGGGSGSTV LNANNPGGNS MYGGSDNPTG LTAGTASLSC GWVLCLIWMV TFAFVKEKV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-21 | 416 | 487 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-39 | 416 | 500 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28117.1 | 0 | 2 | 599 | 3 | 587 | unknown [Zea mays] |
GenBank | ACN28414.1 | 0 | 2 | 599 | 3 | 613 | unknown [Zea mays] |
RefSeq | NP_001132166.2 | 0 | 137 | 599 | 53 | 487 | hypothetical protein LOC100193588 [Zea mays] |
RefSeq | NP_001142611.1 | 0 | 2 | 599 | 3 | 610 | hypothetical protein LOC100274879 [Zea mays] |
RefSeq | XP_002463588.1 | 0 | 1 | 599 | 1 | 615 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-18 | 410 | 500 | 7 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |