Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00048042m |
Family | CBM57 |
Protein Properties | Length: 285 Molecular Weight: 31328.7 Isoelectric Point: 6.9797 |
Chromosome | Chromosome/Scaffold: 0160287 Start: 619 End: 2470 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 44 | 205 | 6.4e-27 |
FAINCGGKETSYSDRMSTVFSEDSTDLGGAGFHVNTTSHWVVSHVGSDPFSKSPGIVQDILDTDMLELYKIARTSTGALRYYVVGLANGKYTVQLFFAEI VIVDGPGRRVFDIDIQDRNIRKDFDIAKEAGGSRKPTNITHEVIVDNSILVIHLYWSGRGTC |
Full Sequence |
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Protein Sequence Length: 285 Download |
DMVNGCLALW WLCYLWKYGS LTILNCLHMQ ECNGNDLTDH ATSFAINCGG KETSYSDRMS 60 TVFSEDSTDL GGAGFHVNTT SHWVVSHVGS DPFSKSPGIV QDILDTDMLE LYKIARTSTG 120 ALRYYVVGLA NGKYTVQLFF AEIVIVDGPG RRVFDIDIQD RNIRKDFDIA KEAGGSRKPT 180 NITHEVIVDN SILVIHLYWS GRGTCCIPYE GAYGPLVSAI KVTHFQDPKI SPPQAPHSGS 240 SRQDEKRRGI IAGIAALCIA AAVISSSVVY LWWKWVSLVK RSMA* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03150 | PLN03150 | 2.0e-7 | 111 | 222 | 116 | + hypothetical protein; Provisional |
pfam11721 | Malectin | 8.0e-44 | 42 | 220 | 182 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC80088.1 | 0 | 20 | 284 | 346 | 607 | hypothetical protein OsI_21825 [Oryza sativa Indica Group] |
RefSeq | NP_001056921.1 | 0 | 20 | 284 | 419 | 680 | Os06g0167500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002303698.1 | 5.04467e-44 | 24 | 250 | 380 | 610 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324865.1 | 5.00264e-43 | 41 | 253 | 345 | 556 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002436559.1 | 0 | 21 | 284 | 297 | 564 | hypothetical protein SORBIDRAFT_10g004730 [Sorghum bicolor] |