| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00048056m |
| Family | GT47 |
| Protein Properties | Length: 338 Molecular Weight: 38074.6 Isoelectric Point: 9.5201 |
| Chromosome | Chromosome/Scaffold: 0156981 Start: 438 End: 2690 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT47 | 111 | 334 | 5.60519e-45 |
| LRVYVYEMPSKFTYDLLRRFRDSYRKTENLTSNGSPVHRLIEQHSIDYWLWADLIASEPQRLLKSIVRVQRQEEADIFYVPFFTTISYFLLEKQECKALY REALKWVTDQPAWQRSEGRDHVIPVHHPWSFKSVRRFVKKAIWLLPDMDSTGNWYKPGQVYLEKDVILPYVPNVDHCDSRCVLETQSKRSILLFFRGRLK RNAGGKIRSKLVEELKSAEDIVIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 338 Download |
| MAGKQFPSLA HARPASASSR RLLAAAGALV LLSAAYFLLL SPSSPRSAAT VLASPSSTTS 60 SFLASLESFL AAPHPSDSAA APGDLDSAIR SQEEARLLGD PAWPAPAAGP LRVYVYEMPS 120 KFTYDLLRRF RDSYRKTENL TSNGSPVHRL IEQHSIDYWL WADLIASEPQ RLLKSIVRVQ 180 RQEEADIFYV PFFTTISYFL LEKQECKALY REALKWVTDQ PAWQRSEGRD HVIPVHHPWS 240 FKSVRRFVKK AIWLLPDMDS TGNWYKPGQV YLEKDVILPY VPNVDHCDSR CVLETQSKRS 300 ILLFFRGRLK RNAGGKIRSK LVEELKSAED IVIEERL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 1.0e-36 | 111 | 334 | 232 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF06505.2 | 0 | 43 | 335 | 44 | 337 | Os01g0811400 [Oryza sativa Japonica Group] |
| GenBank | EAY76230.1 | 0 | 43 | 335 | 45 | 338 | hypothetical protein OsI_04166 [Oryza sativa Indica Group] |
| RefSeq | NP_001044591.1 | 0 | 43 | 335 | 44 | 337 | Os01g0811400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141657.1 | 0 | 1 | 335 | 1 | 335 | hypothetical protein LOC100273782 [Zea mays] |
| RefSeq | XP_002458661.1 | 0 | 1 | 335 | 1 | 337 | hypothetical protein SORBIDRAFT_03g037670 [Sorghum bicolor] |
