Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00048083m |
Family | GH28 |
Protein Properties | Length: 417 Molecular Weight: 44721.2 Isoelectric Point: 5.669 |
Chromosome | Chromosome/Scaffold: 016028 Start: 3545 End: 6765 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 32 | 381 | 0 |
ADKGGAQLYVPKGLWLTGSFNLTSHLTLFLESGAVIVGTQEVSQWPVAEPLPSYGRGMDLPGPSHRSLINGQNLIDVVITGNNGIIDGQGSTWWNWFRSN KLNYSRPHLVELVYSEQIVISNITFLNSPAWSIHPVYCSNVVLNNITIQTSSDAPLNHGIVPDSSSNMCIEDSNISVSHDAISLKSGWDNYGITFGRPTS DIHIRRVNLQSPLGAALAFGSEMSGGISDIHADHLRIHDSSKGIFFKTAQGRGGYIRDTVISDVQMEDVSVAIAFTGSWSSHPDDHFDPAALPLINRITL KNMTGTKISVAGVLSGITGDPFTEICLSNINFSLADSANFTSWSCSNVSG |
Full Sequence |
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Protein Sequence Length: 417 Download |
SVTITEFGAI GDGVTLNTVP FQNAVFYVRS FADKGGAQLY VPKGLWLTGS FNLTSHLTLF 60 LESGAVIVGT QEVSQWPVAE PLPSYGRGMD LPGPSHRSLI NGQNLIDVVI TGNNGIIDGQ 120 GSTWWNWFRS NKLNYSRPHL VELVYSEQIV ISNITFLNSP AWSIHPVYCS NVVLNNITIQ 180 TSSDAPLNHG IVPDSSSNMC IEDSNISVSH DAISLKSGWD NYGITFGRPT SDIHIRRVNL 240 QSPLGAALAF GSEMSGGISD IHADHLRIHD SSKGIFFKTA QGRGGYIRDT VISDVQMEDV 300 SVAIAFTGSW SSHPDDHFDP AALPLINRIT LKNMTGTKIS VAGVLSGITG DPFTEICLSN 360 INFSLADSAN FTSWSCSNVS GYSKLVLPEP CLDLRTTPSN SSICSALPSY HAAAVA* 420 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 2.0e-15 | 2 | 391 | 410 | + polygalacturonase/glycoside hydrolase family protein |
pfam00295 | Glyco_hydro_28 | 7.0e-19 | 106 | 379 | 280 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN03003 | PLN03003 | 6.0e-20 | 1 | 396 | 420 | + Probable polygalacturonase At3g15720 |
PLN02218 | PLN02218 | 9.0e-21 | 1 | 362 | 373 | + polygalacturonase ADPG |
COG5434 | PGU1 | 1.0e-42 | 2 | 314 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA99544.2 | 0 | 1 | 416 | 42 | 457 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC68574.1 | 0 | 1 | 415 | 34 | 448 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
RefSeq | NP_001066993.1 | 0 | 1 | 416 | 9 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068399.1 | 0 | 1 | 415 | 34 | 448 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148987.1 | 0 | 1 | 411 | 40 | 451 | polygalacturonase [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-33 | 1 | 360 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-33 | 1 | 360 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-33 | 1 | 360 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-33 | 1 | 360 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000005 | 45 | 379 | 51 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG895700 | 271 | 85 | 355 | 0 |
HO797483 | 402 | 1 | 402 | 0 |
FL726043 | 258 | 1 | 258 | 0 |
HO797919 | 363 | 1 | 363 | 0 |
JG955212 | 240 | 171 | 410 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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