Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00048102m |
Family | GH5 |
Protein Properties | Length: 464 Molecular Weight: 51150.8 Isoelectric Point: 7.8431 |
Chromosome | Chromosome/Scaffold: 0158520 Start: 190 End: 1911 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 41 | 363 | 2.9e-33 |
GKTVYFSGFNAYWLMLVASDPARRGQVVAAFRQAAGHGLNLARTWAFSDGGDAPLQAAPGVYDEAMFQGLDFVIAEAGRHGIYLLLCLTNNFHDFGGKRQ YVAWAREAGHHLATADDFFNTTVVKGYYKNHVKTVLTRVNTVTGVAYRDDPTILGWELMNEPRCDADPTGAMVQAWVEEMAPYVKSIDGDHLVTAGLEGF YGDGTHERKDLNPWGIYYGTNFVDTHRAAGVDFATIHLYPDLWLWGAAAAEQLAFLRNWTRSHARDAELYLAKPLLVTEYGKFLWDGVANRTQRDRFLGL VLDSIYASAASGGPLVGGAFWQL |
Full Sequence |
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Protein Sequence Length: 464 Download |
MARPRPEALA ASFLLLFLAA SAGAAGLELV RVDGTQFVVG GKTVYFSGFN AYWLMLVASD 60 PARRGQVVAA FRQAAGHGLN LARTWAFSDG GDAPLQAAPG VYDEAMFQGL DFVIAEAGRH 120 GIYLLLCLTN NFHDFGGKRQ YVAWAREAGH HLATADDFFN TTVVKGYYKN HVKTVLTRVN 180 TVTGVAYRDD PTILGWELMN EPRCDADPTG AMVQAWVEEM APYVKSIDGD HLVTAGLEGF 240 YGDGTHERKD LNPWGIYYGT NFVDTHRAAG VDFATIHLYP DLWLWGAAAA EQLAFLRNWT 300 RSHARDAELY LAKPLLVTEY GKFLWDGVAN RTQRDRFLGL VLDSIYASAA SGGPLVGGAF 360 WQLLDPGMDT LRDGYEIILP EDQRAATIIG NHSRQLAELN GQDVEAVRRR RRQRRRRNVH 420 VGSSSGRSRS RSSSDTPRLH MLLVRFISLF RSITSLFSSA SSV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2730 | BglC | 0.001 | 71 | 203 | 137 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
pfam12876 | Cellulase-like | 0.001 | 186 | 237 | 61 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 9.0e-9 | 41 | 321 | 286 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 2.0e-24 | 37 | 375 | 340 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL79758.1 | 0 | 29 | 457 | 1 | 432 | AC096687_22 putative endohydrolase [Oryza sativa Japonica Group] |
GenBank | EAZ29139.1 | 0 | 29 | 449 | 1 | 424 | hypothetical protein OsJ_13202 [Oryza sativa Japonica Group] |
GenBank | EEC76450.1 | 0 | 29 | 457 | 1 | 433 | hypothetical protein OsI_14158 [Oryza sativa Indica Group] |
RefSeq | NP_001051777.1 | 0 | 21 | 457 | 15 | 454 | Os03g0828500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002463596.1 | 0 | 36 | 405 | 47 | 424 | hypothetical protein SORBIDRAFT_01g002630 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 28 | 399 | 5 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 2.94273e-44 | 38 | 373 | 21 | 352 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 2.94273e-44 | 38 | 373 | 21 | 352 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 2.94273e-44 | 38 | 373 | 21 | 352 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 2.94273e-44 | 38 | 373 | 21 | 352 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |