y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00048108m |
Family | GH1 |
Protein Properties | Length: 402 Molecular Weight: 46737.6 Isoelectric Point: 6.4476 |
Chromosome | Chromosome/Scaffold: 0158289 Start: 39 End: 2364 |
Description | B-S glucosidase 44 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH1 | 45 | 400 | 0 |
NITPYVVLYHYDLPQVLQDQYNGWLSPRIVDDFTRFADFCFRTYGDRVKNWFTINEPRMMASHGYGDGYFPPARCTGCHFGGNSATEPYIAGHNLLLAHA SAVKLYRENSFQVQQGGKIGILLDFVWYEPLTSSIDDEYAAHRARMFTLGWFLHPITYGHYPESMEKIVMGRLPNFTFEQSAMVKGSADYIAINHYTTYY ASNFVNETHTSYANDWHVKLSYERNGVPIGKKGYSDWLYVVPWGLYKALIWTKEKFNNPIMLIGENGIDQSGSDSLPYALYDNFRIDYFEKYLHELQCAI HDGAKVIGYFAWSLLDNFEWRMGFTSKFGIVYVDRSTFTRYPKDSARWFRKIIKNE |
Full Sequence |
---|
Protein Sequence Length: 402 Download |
TTPDNATANV TVDEYNRYMD DVDNMVRVGF DAYRFSISWS RIFPNITPYV VLYHYDLPQV 60 LQDQYNGWLS PRIVDDFTRF ADFCFRTYGD RVKNWFTINE PRMMASHGYG DGYFPPARCT 120 GCHFGGNSAT EPYIAGHNLL LAHASAVKLY RENSFQVQQG GKIGILLDFV WYEPLTSSID 180 DEYAAHRARM FTLGWFLHPI TYGHYPESME KIVMGRLPNF TFEQSAMVKG SADYIAINHY 240 TTYYASNFVN ETHTSYANDW HVKLSYERNG VPIGKKGYSD WLYVVPWGLY KALIWTKEKF 300 NNPIMLIGEN GIDQSGSDSL PYALYDNFRI DYFEKYLHEL QCAIHDGAKV IGYFAWSLLD 360 NFEWRMGFTS KFGIVYVDRS TFTRYPKDSA RWFRKIIKNE E* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02849 | PLN02849 | 1.0e-95 | 4 | 400 | 427 | + beta-glucosidase | ||
TIGR03356 | BGL | 7.0e-96 | 4 | 393 | 415 | + beta-galactosidase. | ||
PLN02814 | PLN02814 | 4.0e-99 | 4 | 393 | 422 | + beta-glucosidase | ||
COG2723 | BglB | 2.0e-99 | 10 | 399 | 419 | + Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam00232 | Glyco_hydro_1 | 4.0e-134 | 2 | 399 | 427 | + Glycosyl hydrolase family 1. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC55716.1 | 0 | 4 | 401 | 69 | 491 | beta-mannosidase 3 [Oncidium Gower Ramsey] |
GenBank | ABC55717.1 | 0 | 4 | 401 | 79 | 501 | beta-mannosidase 2 [Oncidium Gower Ramsey] |
GenBank | EEC69164.1 | 0 | 1 | 400 | 69 | 491 | hypothetical protein OsI_38122 [Oryza sativa Indica Group] |
RefSeq | NP_001066656.1 | 0 | 1 | 400 | 69 | 491 | Os12g0420100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002438912.1 | 0 | 1 | 401 | 85 | 480 | hypothetical protein SORBIDRAFT_10g028060 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2rgm_B | 0 | 2 | 399 | 55 | 481 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 2rgm_A | 0 | 2 | 399 | 55 | 481 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 2rgl_B | 0 | 2 | 399 | 55 | 481 | A Chain A, Rice Bglu1 Beta-Glucosidase, A Plant ExoglucanaseBETA-Glucosidase |
PDB | 2rgl_A | 0 | 2 | 399 | 55 | 481 | A Chain A, Rice Bglu1 Beta-Glucosidase, A Plant ExoglucanaseBETA-Glucosidase |
PDB | 3f5l_B | 0 | 2 | 399 | 55 | 481 | A Chain A, Rice Bglu1 Beta-Glucosidase, A Plant ExoglucanaseBETA-Glucosidase |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
FL814768 | 266 | 29 | 270 | 0 |
FL814290 | 235 | 96 | 329 | 0 |
FL787320 | 261 | 15 | 251 | 0 |
HO777739 | 426 | 4 | 396 | 0 |
HO794963 | 422 | 8 | 396 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|