y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00048215m |
Family | CE8 |
Protein Properties | Length: 373 Molecular Weight: 39887.3 Isoelectric Point: 9.4564 |
Chromosome | Chromosome/Scaffold: 016244 Start: 5725 End: 8288 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 75 | 366 | 0 |
IVVSQDGTGHSRTVQGAVDMVPFGNRRRVKILVRPGMYREKVTVPITKPFVSLIGMGTGRTVITWNARAADIDPSGHQVGTFYSASVAIEADYFCASHIT FENSAPAAPPGAVGQQAVALRLSGDKTMLYRCRILGTQDTLFDNIGRHYLYNCDIQGSIDFIFGNARSLYQGCTLHAVATGYGAIAASQRSSPAEDSGFS FVGCRLTGSGTLYLGRAWGRYARVVYSYCDLSGIVLPQGWSDWGDRSRTKTVLFGEYSCKGPGASTRQRVPWSRALTYEEARPFLGRSFING |
Full Sequence |
---|
Protein Sequence Length: 373 Download |
MAAAGRELRC VRAAVVVLLL VAASVPTAAA GADGFITWDD LSIPGAAAAA VAAPRGVSDG 60 RGGVKSRARH DLETIVVSQD GTGHSRTVQG AVDMVPFGNR RRVKILVRPG MYREKVTVPI 120 TKPFVSLIGM GTGRTVITWN ARAADIDPSG HQVGTFYSAS VAIEADYFCA SHITFENSAP 180 AAPPGAVGQQ AVALRLSGDK TMLYRCRILG TQDTLFDNIG RHYLYNCDIQ GSIDFIFGNA 240 RSLYQGCTLH AVATGYGAIA ASQRSSPAED SGFSFVGCRL TGSGTLYLGR AWGRYARVVY 300 SYCDLSGIVL PQGWSDWGDR SRTKTVLFGE YSCKGPGAST RQRVPWSRAL TYEEARPFLG 360 RSFINGEQWL RL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-103 | 75 | 371 | 297 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 6.0e-107 | 75 | 370 | 297 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-107 | 68 | 370 | 305 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-130 | 74 | 372 | 300 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 3.0e-140 | 35 | 372 | 340 | + pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC82420.1 | 0 | 31 | 372 | 29 | 399 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
GenBank | EEE67559.1 | 0 | 31 | 372 | 29 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_001060235.1 | 0 | 31 | 324 | 29 | 324 | Os07g0607400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002463165.1 | 0 | 32 | 324 | 22 | 314 | hypothetical protein SORBIDRAFT_02g038910 [Sorghum bicolor] |
RefSeq | XP_002522727.1 | 0 | 6 | 372 | 26 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 74 | 371 | 8 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.4013e-45 | 76 | 371 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-18 | 105 | 358 | 63 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000000002 | 86 | 249 | 19 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000000002 | 86 | 249 | 19 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |