Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00048354m |
Family | GH28 |
Protein Properties | Length: 443 Molecular Weight: 47236.8 Isoelectric Point: 9.939 |
Chromosome | Chromosome/Scaffold: 0164775 Start: 746 End: 2270 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 105 | 402 | 0 |
PGIAGRDKAGGRYASLIGGSNLTDVVVTGDNGTIDGQGAVWWSKFRSNKLKYTRGYLIEVLWSDTVVVANVTLLNSPAWNIHPVYSRNIVVQGVTILAPT RSPNTDGINPDSCAHVRIQDCYVVSGDDCVAIKSGWDEYGIRVGMPSEHIVVRRLTCVSPTSAVIALGSEMSGGIRDVRAEDIAAVDSESGVRIKTAVGR GAYVRDVFVRRMTLQTMKWVFWMTGNYKSHPDDGFDPSAVPLVEGISYQDVVATGVYKAAARLEGIQGAPFRGICLANVTAELDKSKKYPWTCTDVEG |
Full Sequence |
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Protein Sequence Length: 443 Download |
MRPPGGRVVD GGRAPPLLPS SVQERAKHVP VAQLPGAHGV AGGLRRRGRR HDVQHGGIPF 60 GGGPPVAVLR RGRRHAVRAG GEVADGALQP DEPLHALPAQ RRRHPGIAGR DKAGGRYASL 120 IGGSNLTDVV VTGDNGTIDG QGAVWWSKFR SNKLKYTRGY LIEVLWSDTV VVANVTLLNS 180 PAWNIHPVYS RNIVVQGVTI LAPTRSPNTD GINPDSCAHV RIQDCYVVSG DDCVAIKSGW 240 DEYGIRVGMP SEHIVVRRLT CVSPTSAVIA LGSEMSGGIR DVRAEDIAAV DSESGVRIKT 300 AVGRGAYVRD VFVRRMTLQT MKWVFWMTGN YKSHPDDGFD PSAVPLVEGI SYQDVVATGV 360 YKAAARLEGI QGAPFRGICL ANVTAELDKS KKYPWTCTDV EGVSANVTPP PCDALQQSGG 420 ALRLRRPKQQ QLAAAATTTS LI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-17 | 126 | 412 | 310 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-18 | 133 | 413 | 286 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-19 | 136 | 412 | 298 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-28 | 121 | 400 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-34 | 93 | 318 | 234 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG41831.1 | 0 | 109 | 416 | 100 | 407 | glycoside hydrolase, family 28 [Zea mays] |
DDBJ | BAD67712.1 | 0 | 109 | 416 | 146 | 453 | putative polygalacturonase [Oryza sativa Japonica Group] |
RefSeq | NP_001151164.1 | 0 | 109 | 416 | 147 | 454 | glycoside hydrolase, family 28 [Zea mays] |
RefSeq | XP_002301370.1 | 0 | 85 | 419 | 105 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002437680.1 | 0 | 109 | 416 | 149 | 456 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5e-35 | 156 | 386 | 187 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5e-35 | 156 | 386 | 187 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5e-35 | 156 | 386 | 187 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5e-35 | 156 | 386 | 187 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000001 | 136 | 357 | 117 | 335 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL855595 | 264 | 133 | 396 | 0 |
FE637277 | 230 | 174 | 403 | 0 |
FL940589 | 224 | 197 | 420 | 0 |
ES810566 | 311 | 110 | 419 | 0 |
FL868735 | 219 | 109 | 327 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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