Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00048669m |
Family | GT47 |
Protein Properties | Length: 614 Molecular Weight: 67356.9 Isoelectric Point: 6.9025 |
Chromosome | Chromosome/Scaffold: 015932 Start: 5111 End: 6952 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 178 | 522 | 0 |
GQYIYVQELPARFNKDMVQKCDSLSPWTDMCRYTTNGGFGPLLRGGKGAFQGTGTGWYDTDEPALDIIFHERVKRYECLTDDPSLAAAVFVPFYAGLDVA RHLWGTNVSARDELALDLAGLLAARPEWRAMGGRDHFFVAGRATWDFRREAGGQSGWGSKLLNLPAARNMTALVVEASPWHLNDVAVPYPTAFHPASDED LFFWQDRVRALNRTYLFSLAGVARPGDAKSIEGHLVDQCKASPASCALMECSTTAGPDNKCESPAAVMRLFQSSTFCLLPRGGTDTRRAAFDAVLAGCIP VFFHPSSAYVQYSWFLPRSHTDYSVYIPEEDVRRNASVEERLRKV |
Full Sequence |
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Protein Sequence Length: 614 Download |
MKRHNAGELP LSSAPAPAGD GIKRVTEKEE AEDKMDKYDK GRIRCSRLCF LFALAATVTI 60 LARHCYEAGL GRGGNAGVVR IEAAHGPPPS LHRDRKIAPI ARREPPVSDR SPSAPADAVD 120 DASWKASASE SAQPDDGDKK PTKEKGSSPS ASHGNKYGGH PFARALAAAD NKDDLCGGQY 180 IYVQELPARF NKDMVQKCDS LSPWTDMCRY TTNGGFGPLL RGGKGAFQGT GTGWYDTDEP 240 ALDIIFHERV KRYECLTDDP SLAAAVFVPF YAGLDVARHL WGTNVSARDE LALDLAGLLA 300 ARPEWRAMGG RDHFFVAGRA TWDFRREAGG QSGWGSKLLN LPAARNMTAL VVEASPWHLN 360 DVAVPYPTAF HPASDEDLFF WQDRVRALNR TYLFSLAGVA RPGDAKSIEG HLVDQCKASP 420 ASCALMECST TAGPDNKCES PAAVMRLFQS STFCLLPRGG TDTRRAAFDA VLAGCIPVFF 480 HPSSAYVQYS WFLPRSHTDY SVYIPEEDVR RNASVEERLR KVSPEVVRTM RDTVVGLIPS 540 VTYSDTTSRL ETTVKDAFDI AVAAMINRVT KLRRGIAEGR PEEEKQERYS WKYPLLAEGQ 600 KVEDPHEWDP LFN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-52 | 175 | 522 | 363 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM93699.1 | 0 | 45 | 612 | 15 | 595 | hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EEC67107.1 | 0 | 1 | 612 | 1 | 614 | hypothetical protein OsI_33904 [Oryza sativa Indica Group] |
GenBank | EEE51089.1 | 0 | 1 | 612 | 1 | 583 | hypothetical protein OsJ_31792 [Oryza sativa Japonica Group] |
RefSeq | NP_001064771.1 | 0 | 1 | 612 | 1 | 617 | Os10g0459700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002464523.1 | 0 | 1 | 613 | 1 | 613 | hypothetical protein SORBIDRAFT_01g020070 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES833008 | 285 | 331 | 613 | 0 |
JG636298 | 264 | 249 | 512 | 0 |
CF668912 | 272 | 303 | 573 | 0 |
CX076275 | 265 | 252 | 515 | 0 |
CX667961 | 275 | 321 | 593 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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