y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00049134m |
Family | GH14 |
Protein Properties | Length: 660 Molecular Weight: 73060.8 Isoelectric Point: 5.7765 |
Chromosome | Chromosome/Scaffold: 067567 Start: 580 End: 4789 |
Description | beta-amylase 7 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 225 | 642 | 0 |
YVMLPLGVVNVNGEVVDADELVGQLRVLKAAGVDGVMVDCWWGNVEAHRPQEYNWTGYKRLFQMIRELKLKLQVVMSFHECGGNVGDDVSIPLPHWVTEI GRSNPDIYFTDRAGRRNTECLSWGIDKERVLQGRTAVEVYFDFMRSFRVEFDEYFEDGIISEIEIGLGACGELRYPSYPAKHGWKYPGIGEFQCYDRYLQ KNLRRAAEARGHTIWARGPGNAGHYNSEPNLTGFFCDGGDYDSYYGRFFLNWYSQMLVDHADRVLMLARLAFEGSSIAVKVSGVHWWYKTASHAAELTAG FYNPCNRDGYAPIAAVLKKYDAALNFTCVELRTMDQHEVYPEAFADPEGLVWQVLNAAWDAGIQVASENALPCYDRDGFNKILENAKPLNDPDGRHLFGF TYLRLSKVLFERRNFFEF |
Full Sequence |
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Protein Sequence Length: 660 Download |
EEEDDGCFYM DPCPVSAASP TGSGGVGRAN PGRRRAREEE RTKLRERQRR AITGRILAGL 60 RQHGNYCLRA RADINEVIAA LAREAGWIVL PDGTTFPTSS PPPAAAQPAP RPVMVAAAPL 120 VLPLPTSPAL PLRGAPPVAA RPISHRPALA PVPSVLLSPP LAAASSRPPA DDVPDGDSSH 180 LLAVPVPVTM DPAAAEDAAV ANQVPDVAPR PPERDFAGTP YVPVYVMLPL GVVNVNGEVV 240 DADELVGQLR VLKAAGVDGV MVDCWWGNVE AHRPQEYNWT GYKRLFQMIR ELKLKLQVVM 300 SFHECGGNVG DDVSIPLPHW VTEIGRSNPD IYFTDRAGRR NTECLSWGID KERVLQGRTA 360 VEVYFDFMRS FRVEFDEYFE DGIISEIEIG LGACGELRYP SYPAKHGWKY PGIGEFQCYD 420 RYLQKNLRRA AEARGHTIWA RGPGNAGHYN SEPNLTGFFC DGGDYDSYYG RFFLNWYSQM 480 LVDHADRVLM LARLAFEGSS IAVKVSGVHW WYKTASHAAE LTAGFYNPCN RDGYAPIAAV 540 LKKYDAALNF TCVELRTMDQ HEVYPEAFAD PEGLVWQVLN AAWDAGIQVA SENALPCYDR 600 DGFNKILENA KPLNDPDGRH LFGFTYLRLS KVLFERRNFF EFERFVKRMH GEAVLDLQV* 660 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02705 | PLN02705 | 7.0e-27 | 11 | 96 | 87 | + beta-amylase | ||
PLN02905 | PLN02905 | 2.0e-28 | 32 | 96 | 68 | + beta-amylase | ||
PLN02905 | PLN02905 | 0 | 203 | 659 | 457 | + beta-amylase | ||
PLN02705 | PLN02705 | 0 | 204 | 652 | 449 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 221 | 652 | 438 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29023.1 | 0 | 101 | 659 | 7 | 567 | beta-amylase [Zea mays] |
GenBank | EEC85090.1 | 0 | 25 | 659 | 44 | 651 | hypothetical protein OsI_32458 [Oryza sativa Indica Group] |
GenBank | EEE70265.1 | 0 | 25 | 659 | 43 | 650 | hypothetical protein OsJ_30408 [Oryza sativa Japonica Group] |
RefSeq | NP_001063976.1 | 0 | 181 | 659 | 66 | 533 | Os09g0569200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459849.1 | 0 | 190 | 659 | 1 | 469 | hypothetical protein SORBIDRAFT_02g012320 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 221 | 652 | 11 | 444 | A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Mycobacterium Tuberculosis |
PDB | 1q6c_A | 0 | 221 | 652 | 11 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 221 | 652 | 11 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1btc_A | 0 | 221 | 652 | 7 | 440 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
PDB | 1byd_A | 0 | 221 | 652 | 11 | 444 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV021150 | 292 | 307 | 598 | 0 |
CO447286 | 289 | 299 | 587 | 0 |
JG814958 | 249 | 253 | 501 | 0 |
FF359578 | 263 | 261 | 523 | 0 |
DY402216 | 244 | 326 | 569 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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