| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00049463m |
| Family | GH10 |
| Protein Properties | Length: 399 Molecular Weight: 44374.4 Isoelectric Point: 7.1646 |
| Chromosome | Chromosome/Scaffold: 072827 Start: 30 End: 2404 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 256 | 396 | 3.1e-37 |
| QTAKDFPIGSAIASTILGNQAYQKWFVDRFNAAVFEDELKWYSTEPTSGLLRFDVPDQMLAFVRSHRVMVRGHNIFWENQDATPRWVKNLTSPDDLRAAV NARIQGLMTRYRGEFAHWDVNNEMLHYNFYEQRLGPNASME | |||
| Full Sequence |
|---|
| Protein Sequence Length: 399 Download |
| CCVCGLLCSL AAAASFLLHS PQLEALPWAE EAVELARSVA AMRTPRSAPR AVAGFVVLWM 60 LLHCGSELVA AVPPDGWYDY AAYTDCRGQP EPALYNGGIL KFGNSDDPDG YRTTETGVFS 120 PAFVVYNLNK TTMYTFSCWV KLEGASNALI TARLAPDNTG ARCIATVLAR SDCWAFVKGG 180 FVLDWPTQTA VIFFQNADKT PMKITVASGS LQPFTTDQWA MHQQDTIRKR RKRVATIHVA 240 DPQGARVVGA SVSVQQTAKD FPIGSAIAST ILGNQAYQKW FVDRFNAAVF EDELKWYSTE 300 PTSGLLRFDV PDQMLAFVRS HRVMVRGHNI FWENQDATPR WVKNLTSPDD LRAAVNARIQ 360 GLMTRYRGEF AHWDVNNEML HYNFYEQRLG PNASMESFS |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 1.0e-18 | 245 | 381 | 138 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 2.0e-29 | 294 | 398 | 115 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-32 | 258 | 392 | 143 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94920.1 | 0 | 55 | 399 | 11 | 359 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABF94921.1 | 0 | 55 | 399 | 11 | 354 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC74851.1 | 0 | 55 | 399 | 170 | 513 | hypothetical protein OsI_10717 [Oryza sativa Indica Group] |
| RefSeq | NP_001140909.1 | 0 | 42 | 399 | 1 | 356 | hypothetical protein LOC100272986 [Zea mays] |
| RefSeq | XP_002468186.1 | 0 | 54 | 399 | 12 | 356 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 0.000000000000001 | 263 | 381 | 15 | 130 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xyf_B | 0.000000000000006 | 263 | 380 | 16 | 130 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1xyf_A | 0.000000000000006 | 263 | 380 | 16 | 130 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6x_B | 0.000000000000006 | 263 | 380 | 16 | 130 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6x_A | 0.000000000000006 | 263 | 380 | 16 | 130 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
