| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00049604m |
| Family | GT43 |
| Protein Properties | Length: 443 Molecular Weight: 47580.2 Isoelectric Point: 6.7639 |
| Chromosome | Chromosome/Scaffold: 070116 Start: 552 End: 3736 |
| Description | Nucleotide-diphospho-sugar transferases superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT43 | 189 | 397 | 0 |
| LAHTLRLVDAQLMWIVVEPGHRTDAVAAVLSRSNLDFLHITGPGDSTASLRLHALREIRAKRMDGIVVFADENSILRTELFDEAQKVSTVGAVPVGILGD DDGTSESFLQAPSCDAAGKLVGYHVSEETVLPANRGDMLMSSRLEWAGFVVNARALWDDAKERPEWVRDLGAIDDADARAASPLALVTDPGRVEPLASCA QAALAWSLR | |||
| Full Sequence |
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| Protein Sequence Length: 443 Download |
| MKLPLWPGLA PAVGPPDAAP EPAKPSLPAA WLLLHALFCA TSMAVGFRFS RLIVYLLFLP 60 TPPINPAAQL VSLVSPPVML TAGNATATIT TTTTTTTTVT TTTTVAAEIG PHQHQHHYHG 120 PVFVGRHPIR VRSWPHPDPN ELLKAHRILA AVQNAQRSSK RRGAGPPRPV IAVTPTTTSV 180 LQVPSLTSLA HTLRLVDAQL MWIVVEPGHR TDAVAAVLSR SNLDFLHITG PGDSTASLRL 240 HALREIRAKR MDGIVVFADE NSILRTELFD EAQKVSTVGA VPVGILGDDD GTSESFLQAP 300 SCDAAGKLVG YHVSEETVLP ANRGDMLMSS RLEWAGFVVN ARALWDDAKE RPEWVRDLGA 360 IDDADARAAS PLALVTDPGR VEPLASCAQA ALAWSLRSDS LHEVKFPHEW KFDPPQLSTG 420 SNEQSVKPET KQTTLASTED QH* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02458 | PLN02458 | 8.0e-15 | 166 | 357 | 200 | + transferase, transferring glycosyl groups | ||
| pfam03360 | Glyco_transf_43 | 6.0e-28 | 189 | 400 | 230 | + Glycosyltransferase family 43. | ||
| cd00218 | GlcAT-I | 3.0e-58 | 168 | 399 | 244 | + Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC78139.1 | 0 | 1 | 442 | 1 | 446 | hypothetical protein OsI_17696 [Oryza sativa Indica Group] |
| GenBank | EEE61808.1 | 0 | 1 | 442 | 1 | 446 | hypothetical protein OsJ_16428 [Oryza sativa Japonica Group] |
| RefSeq | NP_001105810.1 | 0 | 1 | 409 | 1 | 416 | glycosyltransferase [Zea mays] |
| RefSeq | NP_001148104.1 | 0 | 1 | 442 | 1 | 454 | LOC100281712 [Zea mays] |
| RefSeq | XP_002448650.1 | 0 | 1 | 442 | 1 | 454 | hypothetical protein SORBIDRAFT_06g030810 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2d0j_D | 0.0000000002 | 170 | 402 | 5 | 230 | A Chain A, Crystal Structure Of Human Glcat-S Apo Form |
| PDB | 2d0j_C | 0.0000000002 | 170 | 402 | 5 | 230 | A Chain A, Crystal Structure Of Human Glcat-S Apo Form |
| PDB | 2d0j_B | 0.0000000002 | 170 | 402 | 5 | 230 | A Chain A, Crystal Structure Of Human Glcat-S Apo Form |
| PDB | 2d0j_A | 0.0000000002 | 170 | 402 | 5 | 230 | A Chain A, Crystal Structure Of Human Glcat-S Apo Form |
| PDB | 1v84_B | 0.0000000009 | 172 | 400 | 7 | 235 | A Chain A, Crystal Structure Of Human Glcat-S Apo Form |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL744805 | 248 | 196 | 443 | 0 |
| FL729162 | 264 | 154 | 417 | 0 |
| EE178691 | 230 | 122 | 351 | 0 |
| EC888451 | 228 | 122 | 349 | 0 |
| CO452360 | 226 | 122 | 347 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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