Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00049701m |
Family | GT47 |
Protein Properties | Length: 505 Molecular Weight: 55957.1 Isoelectric Point: 9.9466 |
Chromosome | Chromosome/Scaffold: 070839 Start: 1494 End: 3397 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 120 | 443 | 0 |
AALRVYVYDLPAEFHFGMLGWDGKGEAAWPDLRDGRAAPHYPGGLNLQHSVAYWLALDILSSTTLPPGGAAGRPCIAVRVTNASLADVFFVPFFASLSYN RHSKLLRGERVSRNRALQAELVKYLARREEWRRWGGRDHLIVPHHPNSMMEARKKLSAAMFVLSDFGRYSPDVANLKKDVIAPYNHVVRSLADDESPAFD QRPVLAYFQGAIHRKAGGKVRQKLYQLLKGEPDVHFSYGSVRQNGIRRATAGMSTSKFCLNIAGDTPSSNRLFDAIVSHCVPVVISDDIELPFEDVLDYS EFCVFVRAADAARKGFLLRLLRGV |
Full Sequence |
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Protein Sequence Length: 505 Download |
MVAERKMQPP PPPEHRRALR FVAFLAVSLL AFSCWALVSS RINDAVPDSA ALVGDVDKMP 60 ALAGDGEEGA RRPAPAASAA VPASGGAARL MSDPVIREPP VVREGGGEGE RGGRCDADTA 120 ALRVYVYDLP AEFHFGMLGW DGKGEAAWPD LRDGRAAPHY PGGLNLQHSV AYWLALDILS 180 STTLPPGGAA GRPCIAVRVT NASLADVFFV PFFASLSYNR HSKLLRGERV SRNRALQAEL 240 VKYLARREEW RRWGGRDHLI VPHHPNSMME ARKKLSAAMF VLSDFGRYSP DVANLKKDVI 300 APYNHVVRSL ADDESPAFDQ RPVLAYFQGA IHRKAGGKVR QKLYQLLKGE PDVHFSYGSV 360 RQNGIRRATA GMSTSKFCLN IAGDTPSSNR LFDAIVSHCV PVVISDDIEL PFEDVLDYSE 420 FCVFVRAADA ARKGFLLRLL RGVPRDEWTR MWRRLKEVAR HFEYQYPSRP GDAVQMIWGA 480 VARKMHSVKL QLHKRGRFQR TAWE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-53 | 122 | 438 | 326 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC83632.1 | 0 | 1 | 504 | 53 | 565 | hypothetical protein OsI_29363 [Oryza sativa Indica Group] |
RefSeq | NP_001061895.1 | 0 | 1 | 504 | 53 | 565 | Os08g0438600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002284930.1 | 0 | 107 | 501 | 59 | 448 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002284932.1 | 0 | 107 | 501 | 20 | 409 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
RefSeq | XP_002444408.1 | 0 | 4 | 504 | 8 | 538 | hypothetical protein SORBIDRAFT_07g021480 [Sorghum bicolor] |